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Sample GSM99447 Query DataSets for GSM99447
Status Public on Mar 08, 2006
Title brain, Right Frontal Parietal: Extract65_le2
Sample type RNA
 
Source name brain, Right Frontal Parietal
Organism Homo sapiens
Characteristics tissue: brain, Right Frontal Parietal
histology: GBM
tumor number (as appears in figure 3): 1667
age: 44
gender: MALE
grade: 4
living: DECEASED
survival time: 588
survival cluster: SC2
hc_74_samples: HC2B
hc_85_samples: HC2B
array: 133B
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date Sep 11, 2014
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL97
Series (1)
GSE4412 freij-affy-human-91666
Relations
Reanalyzed by GSE61335

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1858.448 A 0.123572
AFFX-BioB-M_at 1405.6609 A 0.156732
AFFX-BioB-3_at 474.3836 A 0.368438
AFFX-BioC-5_at 2752.4727 P 0.001593
AFFX-BioC-3_at 1713.8872 P 0.012547
AFFX-BioDn-5_at 1702.5862 A 0.108979
AFFX-BioDn-3_at 21389.26 P 0.004017
AFFX-CreX-5_at 25036.084 P 0.000052
AFFX-CreX-3_at 39697.94 P 0.000044
AFFX-DapX-5_at 99.25045 A 0.574038
AFFX-DapX-M_at 631.2779 A 0.514890
AFFX-DapX-3_at 157.9167 A 0.843268
AFFX-LysX-5_at 220.77899 A 0.544587
AFFX-LysX-M_at 781.16833 A 0.411380
AFFX-LysX-3_at 269.19006 A 0.340661
AFFX-PheX-5_at 84.76698 A 0.794268
AFFX-PheX-M_at 48.251766 A 0.910522
AFFX-PheX-3_at 194.7173 A 0.860518
AFFX-ThrX-5_at 113.84771 A 0.953518
AFFX-ThrX-M_at 336.21332 A 0.470241

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.




Supplementary file Size Download File type/resource
GSM99447.CEL.gz 3.5 Mb (ftp)(http) CEL

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