GEO help: Mouse over screen elements for information.
Status
Public on Mar 08, 2006
Title
brain, Right Frontal Parietal: Extract66_le1
Sample type
RNA
Source name
brain, Right Frontal Parietal
Organism
Homo sapiens
Characteristics
tissue: brain, Right Frontal Parietal histology: GBM tumor number (as appears in figure 3): 1745 age: 42 gender: FEMALE grade: 4 living: ALIVE survival time: 780 survival cluster: SC2 hc_74_samples: HC2A hc_85_samples: HC2A array: 133A
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM Treatment, type=remove
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96
Series (1)
Relations
Reanalyzed by
GSM326683
Reanalyzed by
GSE61335
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS 5 or GCOS software.
ABS_CALL
The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE
The detection p-value calculated by the MAS 5 or GCOS software
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1436.8274
P
0.002867
AFFX-BioB-M_at
4077.9512
P
0.000662
AFFX-BioB-3_at
1200.2737
P
0.004998
AFFX-BioC-5_at
4884.9136
P
0.000127
AFFX-BioC-3_at
3867.4988
P
0.000070
AFFX-BioDn-5_at
3360.1646
P
0.000110
AFFX-BioDn-3_at
23311.25
P
0.000147
AFFX-CreX-5_at
35841.9
P
0.000044
AFFX-CreX-3_at
56613.36
P
0.000044
AFFX-DapX-5_at
26.825792
A
0.455413
AFFX-DapX-M_at
284.09305
A
0.156732
AFFX-DapX-3_at
37.210243
A
0.990663
AFFX-LysX-5_at
71.084145
A
0.588620
AFFX-LysX-M_at
64.98892
A
0.659339
AFFX-LysX-3_at
42.21298
A
0.645547
AFFX-PheX-5_at
17.089928
A
0.945787
AFFX-PheX-M_at
21.698904
A
0.979978
AFFX-PheX-3_at
98.40219
A
0.760937
AFFX-ThrX-5_at
43.188484
A
0.772364
AFFX-ThrX-M_at
156.40703
A
0.470241
Total number of rows: 22283 Table truncated, full table size 687 Kbytes .Supplementary file
Size
Download
File type/resource
GSM99448.CEL.gz
3.5 Mb
(ftp) (http)
CEL