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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Temporal: Extract69_le1
Sample type
RNA
Source name
brain, Right Frontal Temporal
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Temporal
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2203.5742
P
0.003212
AFFX-BioB-M_at
3139.2568
P
0.001248
AFFX-BioB-3_at
1539.1772
P
0.005565
AFFX-BioC-5_at
5051.577
P
0.000169
AFFX-BioC-3_at
4165.0625
P
0.000070
AFFX-BioDn-5_at
3942.8464
P
0.000081
AFFX-BioDn-3_at
33237.13
P
0.000127
AFFX-CreX-5_at
41170.137
P
0.000044
AFFX-CreX-3_at
60654.25
P
0.000044
AFFX-DapX-5_at
37.032825
A
0.588620
AFFX-DapX-M_at
239.02888
A
0.354453
AFFX-DapX-3_at
34.139114
A
0.868639
AFFX-LysX-5_at
125.27848
A
0.411380
AFFX-LysX-M_at
133.53656
A
0.699394
AFFX-LysX-3_at
106.54385
A
0.470241
AFFX-PheX-5_at
30.405102
A
0.927300
AFFX-PheX-M_at
27.978924
A
0.927300
AFFX-PheX-3_at
116.615105
A
0.603080
AFFX-ThrX-5_at
21.057446
A
0.794268
AFFX-ThrX-M_at
77.66138
A
0.603080
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99454.CEL.gz
3.5 Mb
(ftp) (http) CEL
