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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Temporal: Extract70_le1
Sample type
RNA
Source name
brain, Right Frontal Temporal
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Temporal
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326681 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2148.66
P
0.000509
AFFX-BioB-M_at
5066.0503
P
0.000297
AFFX-BioB-3_at
1611.5853
P
0.000857
AFFX-BioC-5_at
6173.245
P
0.000070
AFFX-BioC-3_at
5049.14
P
0.000060
AFFX-BioDn-5_at
5289.718
P
0.000060
AFFX-BioDn-3_at
31756.383
P
0.000044
AFFX-CreX-5_at
44272.508
P
0.000044
AFFX-CreX-3_at
70107.484
P
0.000044
AFFX-DapX-5_at
89.40913
A
0.470241
AFFX-DapX-M_at
71.53978
A
0.631562
AFFX-DapX-3_at
82.40166
A
0.724854
AFFX-LysX-5_at
59.37212
A
0.699394
AFFX-LysX-M_at
128.58623
A
0.500000
AFFX-LysX-3_at
96.84375
A
0.588620
AFFX-PheX-5_at
14.804846
A
0.927300
AFFX-PheX-M_at
22.415033
A
0.910522
AFFX-PheX-3_at
276.14703
A
0.287743
AFFX-ThrX-5_at
22.869333
A
0.737173
AFFX-ThrX-M_at
29.201233
A
0.672921
22283 686 Kbytes .Supplementary file Size Download File type/resource GSM99456.CEL.gz
3.4 Mb
(ftp) (http) CEL
