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Sample GSM994753 Query DataSets for GSM994753
Status Public on Dec 01, 2020
Title SUDHL6
Sample type RNA
 
Source name Diffuse large B cell lymphoma
Organism Homo sapiens
Characteristics cell line: SUDHL6
Treatment protocol No treatment -- baseline measurement of gene expression without perturbation.
Growth protocol HT and SUDHL6 cell lines were grown in Roswell Park Memorial Institute (RPMI) GlutaMAX medium supplemented with 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin (Invitrogen).
Extracted molecule total RNA
Extraction protocol GL.SOP.LAB.017 version b from Almac Diagnostics (diagnostics@almacgroup.com)
Label biotin
Label protocol GL.SOP.LAB.131 version b from Almac Diagnostics (diagnostics@almacgroup.com)
 
Hybridization protocol GL.SOP.LAB.131 version b from Almac Diagnostics (diagnostics@almacgroup.com)
Scan protocol GL.SOP.LAB.131 version b from Almac Diagnostics (diagnostics@almacgroup.com)
Data processing Standard RMA background correction, quantile normalizsation and median polish summarization (Bolstad et al 2003) on the exon and transcript core probes, resulting in log2 expression estimates. Affymetrix' Expression Console software was used, with default settings.
 
Submission date Aug 29, 2012
Last update date Dec 01, 2020
Contact name Barbara M Bryant
E-mail(s) barbara.bryant@constellationpharma.com
Organization name Constellation Pharmaceuticals
Street address 215 First Street
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL5175
Series (2)
GSE40474 Selective lymphoma cell killing by a PRC2 small molecule inhibitor (Exon array)
GSE40476 Selective lymphoma cell killing by a PRC2 small molecule inhibitor

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
3948543 6.09012
3063807 4.60204
3096575 6.88011
2949118 7.08678
3227645 5.16772
4014076 1.6814
2637819 1.61076
3850234 5.26261
3719161 8.53335
2916345 5.57073
2342904 4.6107
3817464 4.83977
2408437 4.53703
3932148 7.16602
3375091 3.88831
3653619 5.76647
2818035 4.40683
3063795 4.45958
2359282 6.36207
2981874 8.40046

Total number of rows: 22011

Table truncated, full table size 341 Kbytes.




Supplementary file Size Download File type/resource
GSM994753_S0708F0004.CEL.gz 20.7 Mb (ftp)(http) CEL
GSM994753_S0708F0004.rma-gene-core.chp.gz 178.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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