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Status
Public on Mar 08, 2006
Title
brain, Right Temporal Lobe: Extract80_le1
Sample type
RNA
Source name
brain, Right Temporal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Temporal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1747.0085
P
0.001102
AFFX-BioB-M_at
3679.652
P
0.000169
AFFX-BioB-3_at
1444.3035
P
0.000390
AFFX-BioC-5_at
4970.2573
P
0.000110
AFFX-BioC-3_at
4016.3936
P
0.000070
AFFX-BioDn-5_at
3532.32
P
0.000052
AFFX-BioDn-3_at
25791.707
P
0.000095
AFFX-CreX-5_at
36235.48
P
0.000044
AFFX-CreX-3_at
56944.41
P
0.000044
AFFX-DapX-5_at
58.860508
A
0.239063
AFFX-DapX-M_at
141.91652
A
0.340661
AFFX-DapX-3_at
29.752663
A
0.876428
AFFX-LysX-5_at
70.7002
A
0.396920
AFFX-LysX-M_at
128.09683
A
0.574038
AFFX-LysX-3_at
21.911839
A
0.603080
AFFX-PheX-5_at
18.85199
A
0.921998
AFFX-PheX-M_at
20.173258
A
0.891021
AFFX-PheX-3_at
206.34822
A
0.440646
AFFX-ThrX-5_at
14.011852
A
0.760937
AFFX-ThrX-M_at
66.59015
A
0.559354
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99476.CEL.gz
3.5 Mb
(ftp) (http) CEL
