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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract7_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens
Characteristics
tissue: brain, Left frontal Lobe histology: ASTRO tumor number (as appears in figure 3): 659 age: 34 gender: FEMALE grade: 3 living: DECEASED survival time: 442 survival cluster: SC1 hc_74_samples: HC1B hc_85_samples: HC1B array: 133A
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
AA Treatment, type=remove
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96
Series (1)
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS 5 or GCOS software.
ABS_CALL
The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE
The detection p-value calculated by the MAS 5 or GCOS software
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1975.7017
P
0.003212
AFFX-BioB-M_at
2166.24
P
0.000581
AFFX-BioB-3_at
1739.3455
P
0.001796
AFFX-BioC-5_at
4516.8315
P
0.000169
AFFX-BioC-3_at
4053.975
P
0.000070
AFFX-BioDn-5_at
3469.9326
P
0.000195
AFFX-BioDn-3_at
24561.863
P
0.000110
AFFX-CreX-5_at
37884.23
P
0.000044
AFFX-CreX-3_at
59970.0
P
0.000044
AFFX-DapX-5_at
29.886784
A
0.425962
AFFX-DapX-M_at
220.2731
A
0.425962
AFFX-DapX-3_at
23.7921
A
0.941556
AFFX-LysX-5_at
94.8196
A
0.544587
AFFX-LysX-M_at
245.17496
A
0.382599
AFFX-LysX-3_at
119.35947
A
0.250796
AFFX-PheX-5_at
10.908983
A
0.966323
AFFX-PheX-M_at
43.86277
A
0.868639
AFFX-PheX-3_at
92.21508
A
0.617401
AFFX-ThrX-5_at
42.106075
A
0.672921
AFFX-ThrX-M_at
103.13026
A
0.659339
Total number of rows: 22283 Table truncated, full table size 687 Kbytes .Supplementary file
Size
Download
File type/resource
GSM99502.CEL.gz
3.4 Mb
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CEL