GEO help: Mouse over screen elements for information.
Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract25_le2
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
4181.604
P
0.010317
AFFX-BioB-M_at
7011.9443
P
0.001102
AFFX-BioB-3_at
3050.7659
P
0.018281
AFFX-BioC-5_at
11716.677
P
0.000195
AFFX-BioC-3_at
7386.2866
P
0.000147
AFFX-BioDn-5_at
7449.1743
P
0.000225
AFFX-BioDn-3_at
58331.72
P
0.000070
AFFX-CreX-5_at
87315.13
P
0.000044
AFFX-CreX-3_at
141631.7
P
0.000052
AFFX-DapX-5_at
592.5721
A
0.300606
AFFX-DapX-M_at
786.655
A
0.440646
AFFX-DapX-3_at
132.44467
A
0.971543
AFFX-LysX-5_at
115.54726
A
0.794268
AFFX-LysX-M_at
760.95056
A
0.500000
AFFX-LysX-3_at
327.6978
A
0.485110
AFFX-PheX-5_at
77.564705
A
0.916408
AFFX-PheX-M_at
244.23148
A
0.760937
AFFX-PheX-3_at
450.62695
A
0.500000
AFFX-ThrX-5_at
67.27549
A
0.979978
AFFX-ThrX-M_at
91.41753
A
0.814869
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99539.CEL.gz
3.3 Mb
(ftp) (http) CEL
