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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract26_le2
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
4066.904
P
0.011384
AFFX-BioB-M_at
5969.543
P
0.001102
AFFX-BioB-3_at
3383.2761
P
0.012547
AFFX-BioC-5_at
12806.751
P
0.000147
AFFX-BioC-3_at
10543.772
P
0.000127
AFFX-BioDn-5_at
9066.018
P
0.000110
AFFX-BioDn-3_at
65740.17
P
0.000127
AFFX-CreX-5_at
115951.1
P
0.000044
AFFX-CreX-3_at
172957.78
P
0.000044
AFFX-DapX-5_at
109.95432
A
0.425962
AFFX-DapX-M_at
720.5922
A
0.239063
AFFX-DapX-3_at
184.3517
A
0.824672
AFFX-LysX-5_at
244.15845
A
0.588620
AFFX-LysX-M_at
603.0117
A
0.672921
AFFX-LysX-3_at
202.71771
A
0.574038
AFFX-PheX-5_at
97.91636
A
0.760937
AFFX-PheX-M_at
112.43209
A
0.891021
AFFX-PheX-3_at
619.7706
A
0.485110
AFFX-ThrX-5_at
124.77437
A
0.937071
AFFX-ThrX-M_at
590.4944
A
0.440646
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99541.CEL.gz
3.4 Mb
(ftp) (http) CEL
