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Sample GSM99544

Query DataSets for GSM99544

Status

Public on Mar 08, 2006

Title

brain, Left frontal Lobe: Extract28_le1

Sample type

RNA

Source name

brain, Left frontal Lobe

Organism

Homo sapiens

Characteristics

tissue: brain, Left frontal Lobe
histology: GBM
tumor number (as appears in figure 3): 1022
age: 31
gender: MALE
grade: 4
living: DECEASED
survival time: 126
survival cluster: SC2
hc_74_samples: HC2A
hc_85_samples: HC2A
array: 133A

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL96

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSM326678

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	1671.9022	P	0.006871
AFFX-BioB-M_at	3219.8335	P	0.001102
AFFX-BioB-3_at	1581.8389	P	0.012547
AFFX-BioC-5_at	5009.455	P	0.000195
AFFX-BioC-3_at	3495.4524	P	0.000147
AFFX-BioDn-5_at	3788.8542	P	0.000127
AFFX-BioDn-3_at	28493.041	P	0.000127
AFFX-CreX-5_at	40224.83	P	0.000044
AFFX-CreX-3_at	61754.69	P	0.000044
AFFX-DapX-5_at	116.21787	A	0.455413
AFFX-DapX-M_at	229.11111	A	0.440646
AFFX-DapX-3_at	69.50801	A	0.834139
AFFX-LysX-5_at	105.83222	A	0.559354
AFFX-LysX-M_at	111.08995	A	0.794268
AFFX-LysX-3_at	188.15076	A	0.411380
AFFX-PheX-5_at	36.571453	A	0.957038
AFFX-PheX-M_at	22.704704	A	0.993129
AFFX-PheX-3_at	232.17076	A	0.574038
AFFX-ThrX-5_at	50.452732	A	0.876428
AFFX-ThrX-M_at	61.15312	A	0.760937

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99544.CEL.gz	3.5 Mb	(ftp)(http)	CEL