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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract29_le2
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3669.3289
P
0.004484
AFFX-BioB-M_at
6788.96
P
0.000857
AFFX-BioB-3_at
3675.9568
P
0.003595
AFFX-BioC-5_at
11622.612
P
0.000095
AFFX-BioC-3_at
9526.547
P
0.000081
AFFX-BioDn-5_at
8066.587
P
0.000258
AFFX-BioDn-3_at
55869.105
P
0.000225
AFFX-CreX-5_at
91422.82
P
0.000044
AFFX-CreX-3_at
176300.4
P
0.000044
AFFX-DapX-5_at
380.77362
A
0.327079
AFFX-DapX-M_at
865.39813
A
0.275146
AFFX-DapX-3_at
191.19872
A
0.834139
AFFX-LysX-5_at
177.73598
A
0.814869
AFFX-LysX-M_at
114.15402
A
0.883887
AFFX-LysX-3_at
388.09
A
0.396920
AFFX-PheX-5_at
31.25644
A
0.966323
AFFX-PheX-M_at
311.4994
A
0.737173
AFFX-PheX-3_at
251.6998
A
0.804734
AFFX-ThrX-5_at
137.0939
A
0.824672
AFFX-ThrX-M_at
182.11275
A
0.686277
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99547.CEL.gz
3.3 Mb
(ftp) (http) CEL
