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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract30_le2
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
5768.9536
P
0.002275
AFFX-BioB-M_at
12491.169
P
0.006871
AFFX-BioB-3_at
3480.5825
P
0.009337
AFFX-BioC-5_at
15628.603
P
0.000081
AFFX-BioC-3_at
13263.1045
P
0.000169
AFFX-BioDn-5_at
8808.916
P
0.000258
AFFX-BioDn-3_at
93913.44
P
0.000127
AFFX-CreX-5_at
119528.336
P
0.000044
AFFX-CreX-3_at
209140.84
P
0.000044
AFFX-DapX-5_at
783.80963
A
0.396920
AFFX-DapX-M_at
667.9699
A
0.529760
AFFX-DapX-3_at
203.0988
A
0.686277
AFFX-LysX-5_at
795.009
A
0.340661
AFFX-LysX-M_at
241.88448
A
0.834139
AFFX-LysX-3_at
60.248116
A
0.772364
AFFX-PheX-5_at
68.65381
A
0.883887
AFFX-PheX-M_at
100.653915
A
0.876428
AFFX-PheX-3_at
221.67235
A
0.834139
AFFX-ThrX-5_at
254.63623
A
0.737173
AFFX-ThrX-M_at
627.81476
A
0.574038
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99549.CEL.gz
3.3 Mb
(ftp) (http) CEL
