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GEO accession:
Sample GSM995531
Query DataSets for GSM995531
Status
Public on Aug 31, 2012
Title
PSU_RnaSeq_G1E-ER4_diffProtD_7hr_paired-end (superseded by GSE90212)
Sample type
SRA
Source name
G1E-ER4
Organism
Mus musculus
Characteristics
lab: PSU-m
lab description: Hardison - Penn State University
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: G1E-ER4
cell organism: mouse
cell description: Gata1 restored erythroid cells, differentiation induced by estradiol (E2)
cell sex: M
treatment: diffProtD_7hr
treatment description: 7 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)
labexpid: paired-end
age: E0
age description: Embryonic day 0 (stem cell)
labexpid: paired-end
readtype: 2x99D
readtype description: Paired 99 nt directed reads
replicate: 1
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider
Mitch Weiss lab
Treatment protocol
diffProtD_7hr
Growth protocol
G1E_ER4_E2_Hardison_protocol.pdf
Extracted molecule
polyA RNA
Extraction protocol
For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuRnaSeq
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Illumina HiSeq 2000
Description
****************************
GSM995531 record metadata submitted on Aug 31 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90212
****************************
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodePsuRnaSeq
Submission date
Aug 31, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL13112
Series (3)
GSE40522
ENCODE PSU Hardison RnaSeq
GSE49847
A comparative encyclopedia of DNA elements in the mouse genome
GSE51338
Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
Relations
Reanalyzed by
GSE51667
Reanalyzed by
GSE80797
Superseded by
GSE90212
SRA
SRX181757
BioSample
SAMN01141825
Named Annotation
GSM995531_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd7hMinusRawRep1.bigWig
Named Annotation
GSM995531_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd7hMinusRawRep2.bigWig
Named Annotation
GSM995531_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd7hPlusRawRep1.bigWig
Named Annotation
GSM995531_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd7hPlusRawRep2.bigWig
Supplementary file
Size
Download
File type/resource
GSM995531_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd7hMinusRawRep1.bigWig
48.6 Mb
(ftp)
(http)
BIGWIG
GSM995531_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd7hMinusRawRep2.bigWig
43.5 Mb
(ftp)
(http)
BIGWIG
GSM995531_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd7hPlusRawRep1.bigWig
48.8 Mb
(ftp)
(http)
BIGWIG
GSM995531_mm9_wgEncodePsuRnaSeqG1eer4ME0S129R2x99dDiffd7hPlusRawRep2.bigWig
43.6 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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