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Status
Public on Mar 08, 2006
Title
brain, left frontal temporal lobe: Extract36_le2
Sample type
RNA
Source name
brain, left frontal temporal lobe
Organism
Homo sapiens Characteristics
tissue: brain, left frontal temporal lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
5307.247
P
0.002275
AFFX-BioB-M_at
8738.274
P
0.000225
AFFX-BioB-3_at
3944.523
P
0.004017
AFFX-BioC-5_at
12988.067
P
0.000110
AFFX-BioC-3_at
11605.302
P
0.000081
AFFX-BioDn-5_at
10934.413
P
0.000060
AFFX-BioDn-3_at
74810.766
P
0.000095
AFFX-CreX-5_at
127471.59
P
0.000044
AFFX-CreX-3_at
203840.39
P
0.000044
AFFX-DapX-5_at
693.87976
A
0.300591
AFFX-DapX-M_at
780.7214
A
0.313723
AFFX-DapX-3_at
594.0483
A
0.631562
AFFX-LysX-5_at
59.126312
A
0.876428
AFFX-LysX-M_at
309.70255
A
0.617401
AFFX-LysX-3_at
744.1477
A
0.227636
AFFX-PheX-5_at
296.78232
A
0.544587
AFFX-PheX-M_at
77.015625
A
0.971543
AFFX-PheX-3_at
383.54547
A
0.603080
AFFX-ThrX-5_at
144.8029
A
0.921998
AFFX-ThrX-M_at
761.7206
A
0.227636
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99561.CEL.gz
3.3 Mb
(ftp) (http) CEL
