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Sample GSM99579

Query DataSets for GSM99579

Status

Public on Mar 08, 2006

Title

brain, Left Temporal Lobe: Extract46_le2

Sample type

RNA

Source name

brain, Left Temporal Lobe

Organism

Homo sapiens

Characteristics

tissue: brain, Left Temporal Lobe
histology: GBM
tumor number (as appears in figure 3): 2017
age: 60
gender: MALE
grade: 4
living: DECEASED
survival time: 237
survival cluster: SC2
hc_74_samples: HC2B
hc_85_samples: HC2B
array: 133B

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL97

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	2946.074	P	0.007620
AFFX-BioB-M_at	5763.936	P	0.001102
AFFX-BioB-3_at	1910.0078	P	0.039661
AFFX-BioC-5_at	8153.0854	P	0.000095
AFFX-BioC-3_at	6294.8623	P	0.000081
AFFX-BioDn-5_at	4535.3306	P	0.000297
AFFX-BioDn-3_at	46666.59	P	0.000095
AFFX-CreX-5_at	69214.75	P	0.000044
AFFX-CreX-3_at	115869.01	P	0.000044
AFFX-DapX-5_at	439.15137	A	0.175328
AFFX-DapX-M_at	560.7371	A	0.262827
AFFX-DapX-3_at	37.91038	A	0.995516
AFFX-LysX-5_at	179.61443	A	0.588620
AFFX-LysX-M_at	486.00082	A	0.514890
AFFX-LysX-3_at	373.16782	A	0.250796
AFFX-PheX-5_at	40.25222	A	0.891021
AFFX-PheX-M_at	78.70912	A	0.916426
AFFX-PheX-3_at	606.0877	A	0.529760
AFFX-ThrX-5_at	136.85776	A	0.686292
AFFX-ThrX-M_at	303.9305	A	0.559354

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99579.CEL.gz	3.2 Mb	(ftp)(http)	CEL