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Sample GSM99583 Query DataSets for GSM99583
Status Public on Mar 08, 2006
Title brain, Left Temporal Lobe: Extract48_le2
Sample type RNA
 
Source name brain, Left Temporal Lobe
Organism Homo sapiens
Characteristics tissue: brain, Left Temporal Lobe
histology: GBM
tumor number (as appears in figure 3): 1905
age: 75
gender: MALE
grade: 4
living: DECEASED
survival time: 389
survival cluster: SC2
hc_74_samples: HC1A
hc_85_samples: HC1A
array: 133B
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date Sep 11, 2014
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL97
Series (1)
GSE4412 freij-affy-human-91666
Relations
Reanalyzed by GSE61335

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 3332.92 P 0.006187
AFFX-BioB-M_at 7622.168 P 0.000297
AFFX-BioB-3_at 4099.2734 P 0.002556
AFFX-BioC-5_at 12979.542 P 0.000258
AFFX-BioC-3_at 8390.658 P 0.000225
AFFX-BioDn-5_at 6572.2573 P 0.000147
AFFX-BioDn-3_at 58579.65 P 0.000127
AFFX-CreX-5_at 99490.43 P 0.000044
AFFX-CreX-3_at 169105.84 P 0.000044
AFFX-DapX-5_at 319.39597 A 0.440646
AFFX-DapX-M_at 424.29095 A 0.425962
AFFX-DapX-3_at 44.956398 A 0.997133
AFFX-LysX-5_at 200.30234 A 0.588620
AFFX-LysX-M_at 869.94135 A 0.425962
AFFX-LysX-3_at 323.00256 A 0.275146
AFFX-PheX-5_at 57.11003 A 0.891021
AFFX-PheX-M_at 366.64075 A 0.737173
AFFX-PheX-3_at 843.7326 A 0.500000
AFFX-ThrX-5_at 128.65825 A 0.897835
AFFX-ThrX-M_at 153.38083 A 0.868639

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.




Supplementary file Size Download File type/resource
GSM99583.CEL.gz 3.3 Mb (ftp)(http) CEL

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