GEO help: Mouse over screen elements for information.
Status
Public on Mar 08, 2006
Title
brain, Right Anterior Temporal: Extract52_le1
Sample type
RNA
Source name
brain, Right Anterior Temporal
Organism
Homo sapiens Characteristics
tissue: brain, Right Anterior Temporal
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326698 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2009.4711
P
0.015183
AFFX-BioB-M_at
3961.9016
P
0.000195
AFFX-BioB-3_at
1890.365
P
0.002867
AFFX-BioC-5_at
5738.782
P
0.000169
AFFX-BioC-3_at
3859.7354
P
0.000147
AFFX-BioDn-5_at
4002.7095
P
0.000110
AFFX-BioDn-3_at
36239.65
P
0.000127
AFFX-CreX-5_at
48420.24
P
0.000044
AFFX-CreX-3_at
71615.23
P
0.000044
AFFX-DapX-5_at
31.770374
A
0.529760
AFFX-DapX-M_at
49.678307
A
0.603080
AFFX-DapX-3_at
56.06176
A
0.814869
AFFX-LysX-5_at
109.132164
A
0.603080
AFFX-LysX-M_at
134.35168
A
0.559354
AFFX-LysX-3_at
89.39339
A
0.603080
AFFX-PheX-5_at
9.746394
A
0.916408
AFFX-PheX-M_at
23.195927
A
0.904333
AFFX-PheX-3_at
382.3705
A
0.425962
AFFX-ThrX-5_at
46.62948
A
0.834139
AFFX-ThrX-M_at
37.91029
A
0.659339
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99590.CEL.gz
3.5 Mb
(ftp) (http) CEL
