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Sample GSM997734 Query DataSets for GSM997734
Status Public on Dec 30, 2012
Title CL1-0 24h 8/26
Sample type RNA
 
Source name IR 24h
Organism Homo sapiens
Characteristics cell line: CL1-0
tissue: lung adenocarcinoma
treatment: 10 Gy radiation
harvest time after exposure: 24h
Treatment protocol irradiation
Growth protocol Culture with RPMI medium
Extracted molecule total RNA
Extraction protocol Total RNA from the cells were isolated using TRIzol® reagent (Invitrogen, Calsbad, CA) and purified with RNeasy® mini kits (Qiagen)
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 5332143003_D
Data processing Quantile normalization were carried out using Partek microarray analysis software.
 
Submission date Sep 04, 2012
Last update date Dec 30, 2012
Contact name Mong-Hsun Tsai
E-mail(s) motiont@gmail.com
Phone +886-2-3366-6009
Organization name National Taiwan University
Department Institute of Biotechnology
Street address 4F, No. 81, Chang-Xing St.
City Taipei
ZIP/Postal code 106
Country Taiwan
 
Platform ID GPL8179
Series (1)
GSE40602 MicroRNA-449a Enhances Radiosensitivity in Lung Adenocarcinoma Cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_3167304 90.7083 0.58216
ILMN_3168038 2026.13 0
ILMN_3167890 21504.6 0
ILMN_3167526 61.7917 0.76363
ILMN_3167209 443.25 0.0016
ILMN_3168219 455.5 0.00017
ILMN_3167464 618.75 0
ILMN_3167213 67.8333 0.69272
ILMN_3167057 610.333 0.00022
ILMN_3168313 124.5 0.59409
ILMN_3166972 189.25 0.25772
ILMN_3168149 747.917 0
ILMN_3168527 155 0.12282
ILMN_3167562 271.125 0.0234
ILMN_3168099 1272.71 0
ILMN_3168017 629.5 0.00003
ILMN_3167545 70.8333 0.75409
ILMN_3167951 567.25 0
ILMN_3167172 286.125 0.02397
ILMN_3167994 333.708 0.00304

Total number of rows: 1145

Table truncated, full table size 28 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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