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Sample GSM997740 Query DataSets for GSM997740
Status Public on Dec 30, 2012
Title CL1-0 1h 12/24
Sample type RNA
 
Source name IR 1h
Organism Homo sapiens
Characteristics cell line: CL1-0
tissue: lung adenocarcinoma
treatment: 10 Gy radiation
harvest time after exposure: 1h
Treatment protocol irradiation
Growth protocol Culture with RPMI medium
Extracted molecule total RNA
Extraction protocol Total RNA from the cells were isolated using TRIzol® reagent (Invitrogen, Calsbad, CA) and purified with RNeasy® mini kits (Qiagen)
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 5332143003_J
Data processing Quantile normalization were carried out using Partek microarray analysis software.
 
Submission date Sep 04, 2012
Last update date Dec 30, 2012
Contact name Mong-Hsun Tsai
E-mail(s) motiont@gmail.com
Phone +886-2-3366-6009
Organization name National Taiwan University
Department Institute of Biotechnology
Street address 4F, No. 81, Chang-Xing St.
City Taipei
ZIP/Postal code 106
Country Taiwan
 
Platform ID GPL8179
Series (1)
GSE40602 MicroRNA-449a Enhances Radiosensitivity in Lung Adenocarcinoma Cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_3167304 103.042 0.68961
ILMN_3168038 1352 0
ILMN_3167890 21196.3 0
ILMN_3167526 53.4167 0.71313
ILMN_3167209 402.583 0
ILMN_3168219 448.333 0
ILMN_3167464 641.167 0
ILMN_3167213 74.875 0.73853
ILMN_3167057 438.083 0.00054
ILMN_3168313 100.167 0.55184
ILMN_3166972 184.542 0.51817
ILMN_3168149 747.917 0
ILMN_3168527 234.833 0.24989
ILMN_3167562 314.5 0.14738
ILMN_3168099 1145.79 0
ILMN_3168017 483.25 0
ILMN_3167545 57.25 0.73576
ILMN_3167951 595.458 0.00001
ILMN_3167172 312 0.09079
ILMN_3167994 384 0.06503

Total number of rows: 1145

Table truncated, full table size 29 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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