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Sample GSM998915 Query DataSets for GSM998915
Status Public on Jan 01, 2016
Title Saturated fat diet 4
Sample type RNA
 
Source name Xenograft
Organism Homo sapiens
Characteristics tissue: Xenograft
diet: Saturated fat
Treatment protocol Excised xenograft immediately flash frozen to -80C
Growth protocol LAPC-4 prostate cancer xenografts in SCID mice consuming one of four treatment diets. Animals euthanized when tumors reach 1000 mm^3.
Extracted molecule total RNA
Extraction protocol Excised xenograft purified by Trizol Protocol
Label biotin
Label protocol Affymetrix standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Data processing RMA express was used to generate the RMA file
 
Submission date Sep 06, 2012
Last update date Jan 01, 2016
Contact name Jen-Tsan Chi
E-mail(s) jentsan.chi@duke.edu
Phone 919-668-4759
Organization name Duke University
Department Molecular Genetics and Microbiology
Street address 101 Science Drive, DUMC 3382
City Durham
State/province NC
ZIP/Postal code 27708
Country USA
 
Platform ID GPL571
Series (1)
GSE40654 Does Type of Dietary Fat Matter? Prostate Cancer Xenograft Progression in a SCID Mouse Model with Varying Dietary Fat Sources

Data table header descriptions
ID_REF
VALUE RMA normalized data by Expression Console

Data table
ID_REF VALUE
AFFX-BioB-5_at 7.91
AFFX-BioB-M_at 8.66
AFFX-BioB-3_at 8.27
AFFX-BioC-5_at 9.31
AFFX-BioC-3_at 9.72
AFFX-BioDn-5_at 10.78
AFFX-BioDn-3_at 11.95
AFFX-CreX-5_at 13.18
AFFX-CreX-3_at 13.52
AFFX-DapX-5_at 6.75
AFFX-DapX-M_at 9.06
AFFX-DapX-3_at 10.08
AFFX-LysX-5_at 5.41
AFFX-LysX-M_at 6.2
AFFX-LysX-3_at 7.01
AFFX-PheX-5_at 6.28
AFFX-PheX-M_at 6.68
AFFX-PheX-3_at 7.67
AFFX-ThrX-5_at 4.37
AFFX-ThrX-M_at 6.33

Total number of rows: 22277

Table truncated, full table size 345 Kbytes.




Supplementary file Size Download File type/resource
GSM998915_2486_6179_30251_F-93_D_HG-U133A+2.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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