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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_021257.1 RefSeqGene
- Range
-
5109..58997
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001079855.2 → NP_001073324.1 glycogenin-2 isoform a
See identical proteins and their annotated locations for NP_001073324.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) lacks an in-frame exon in the CDS, as compared to variant 2. The resulting isoform (a) lacks an internal segment, as compared to isoform b.
- Source sequence(s)
-
BC023152, CB410312, U94361, U94362
- Consensus CDS
-
CCDS48074.1
- UniProtKB/TrEMBL
-
Q1ZYL7
- Related
- ENSP00000381786.3, ENST00000398806.8
- Conserved Domains (1) summary
-
- cd02537
Location:6 → 257
- GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
-
NM_001184702.2 → NP_001171631.1 glycogenin-2 isoform c
See identical proteins and their annotated locations for NP_001171631.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an in-frame exon and a 3 nt segment in the CDS, as compared to variant 2. The resulting isoform (c, also known as beta) lacks an internal segment in the N-terminal region and an amino acid Q in the C-terminal region, as compared to isoform b.
- Source sequence(s)
-
AC005295, U94361, U94362, U94363
- UniProtKB/TrEMBL
-
Q1ZYL7
- Conserved Domains (2) summary
-
- cd02537
Location:6 → 257
- GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
- COG1442
Location:11 → 275
- RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
-
NM_001184703.2 → NP_001171632.1 glycogenin-2 isoform d
See identical proteins and their annotated locations for NP_001171632.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks two consecutive in-frame exons in the 3' CDS, as compared to variant 2. The resulting isoform (d) lacks an internal segment in the C-terminal region, as compared to isoform b.
- Source sequence(s)
-
AC005295, DQ424901, U94361, U94362
- Consensus CDS
-
CCDS55365.1
- UniProtKB/TrEMBL
-
Q1ZYL7
- Related
- ENSP00000487294.1, ENST00000353656.10
- Conserved Domains (2) summary
-
- cd02537
Location:37 → 288
- GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
- COG1442
Location:42 → 306
- RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
-
NM_001184704.2 → NP_001171633.1 glycogenin-2 isoform e
See identical proteins and their annotated locations for NP_001171633.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks two consecutive exons in the 5' CDS, resulting in a downstream in-frame AUG start codon, and also lacks two consecutive in-frame exons in the 3' CDS, as compared to variant 2. The resulting isoform (e) has a shorter N-terminus and lacks an internal segment in the C-terminal region, as compared to isoform b.
- Source sequence(s)
-
AC005295, AK098046, U94361
- UniProtKB/TrEMBL
-
B3KUV6
- Related
-
ENST00000381161.5
- Conserved Domains (1) summary
-
- cl11394
Location:1 → 102
- Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
-
NM_003918.3 → NP_003909.2 glycogenin-2 isoform b
See identical proteins and their annotated locations for NP_003909.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) encodes the longest isoform (b, also known as alpha).
- Source sequence(s)
-
BC023152, CB410312, U94361, U94362
- Consensus CDS
-
CCDS14121.1
- UniProtKB/Swiss-Prot
- B7WNN6, O15485, O15486, O15487, O15488, O15489, O15490
- UniProtKB/TrEMBL
-
Q1ZYL7
- Related
- ENSP00000370555.3, ENST00000381163.7
- Conserved Domains (2) summary
-
- cd02537
Location:37 → 288
- GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
- COG1442
Location:42 → 306
- RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
2828930..2882818
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017029928.2 → XP_016885417.1 glycogenin-2 isoform X1
- UniProtKB/Swiss-Prot
- B7WNN6, O15485, O15486, O15487, O15488, O15489, O15490
- UniProtKB/TrEMBL
-
Q1ZYL7
- Conserved Domains (2) summary
-
- cd02537
Location:37 → 288
- GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
- COG1442
Location:42 → 306
- RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
-
XM_047442608.1 → XP_047298564.1 glycogenin-2 isoform X2
-
XM_047442609.1 → XP_047298565.1 glycogenin-2 isoform X3
-
XM_047442610.1 → XP_047298566.1 glycogenin-2 isoform X4
-
XM_047442613.1 → XP_047298569.1 glycogenin-2 isoform X6
-
XM_017029929.2 → XP_016885418.1 glycogenin-2 isoform X2
- UniProtKB/TrEMBL
-
Q1ZYL7
- Conserved Domains (2) summary
-
- cd02537
Location:37 → 288
- GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
- COG1442
Location:42 → 306
- RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
-
XM_017029930.2 → XP_016885419.1 glycogenin-2 isoform X6
- UniProtKB/TrEMBL
-
Q1ZYL7
- Conserved Domains (2) summary
-
- cd02537
Location:6 → 257
- GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
- COG1442
Location:11 → 275
- RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
-
XM_017029927.2 → XP_016885416.1 glycogenin-2 isoform X1
- UniProtKB/Swiss-Prot
- B7WNN6, O15485, O15486, O15487, O15488, O15489, O15490
- UniProtKB/TrEMBL
-
Q1ZYL7
- Conserved Domains (2) summary
-
- cd02537
Location:37 → 288
- GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
- COG1442
Location:42 → 306
- RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
-
XM_047442612.1 → XP_047298568.1 glycogenin-2 isoform X5
-
XM_011545600.3 → XP_011543902.1 glycogenin-2 isoform X3
See identical proteins and their annotated locations for XP_011543902.1
- UniProtKB/TrEMBL
-
Q1ZYL7
- Conserved Domains (1) summary
-
- cd02537
Location:6 → 257
- GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
-
XM_047442611.1 → XP_047298567.1 glycogenin-2 isoform X4
-
XM_017029931.2 → XP_016885420.1 glycogenin-2 isoform X6
- UniProtKB/TrEMBL
-
Q1ZYL7
- Conserved Domains (2) summary
-
- cd02537
Location:6 → 257
- GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
- COG1442
Location:11 → 275
- RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
2441715..2495327
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054328052.1 → XP_054184027.1 glycogenin-2 isoform X1
-
XM_054328050.1 → XP_054184025.1 glycogenin-2 isoform X2
-
XM_054328058.1 → XP_054184033.1 glycogenin-2 isoform X6
-
XM_054328054.1 → XP_054184029.1 glycogenin-2 isoform X3
- UniProtKB/TrEMBL
-
A8K8Y1
-
XM_054328056.1 → XP_054184031.1 glycogenin-2 isoform X4
-
XM_054328060.1 → XP_054184035.1 glycogenin-2 isoform X6
-
XM_054328051.1 → XP_054184026.1 glycogenin-2 isoform X2
-
XM_054328057.1 → XP_054184032.1 glycogenin-2 isoform X5
-
XM_054328059.1 → XP_054184034.1 glycogenin-2 isoform X6
-
XM_054328049.1 → XP_054184024.1 glycogenin-2 isoform X1
-
XM_054328055.1 → XP_054184030.1 glycogenin-2 isoform X4
-
XM_054328053.1 → XP_054184028.1 glycogenin-2 isoform X3
- UniProtKB/TrEMBL
-
A8K8Y1