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    mrpl49 mitochondrial ribosomal protein L49 [ Danio rerio (zebrafish) ]

    Gene ID: 558658, updated on 17-Aug-2024

    Summary

    Official Symbol
    mrpl49provided by ZNC
    Official Full Name
    mitochondrial ribosomal protein L49provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060810-161
    See related
    Ensembl:ENSDARG00000075422 AllianceGenome:ZFIN:ZDB-GENE-060810-161
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7160974
    Summary
    Orthologous to human MRPL49 (mitochondrial ribosomal protein L49). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    NEW
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    Genomic context

    See mrpl49 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (26986890..26989994, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (27025015..27028249, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene transmembrane 7 superfamily member 2 Neighboring gene zinc finger, HIT-type containing 2 Neighboring gene zgc:193742 Neighboring gene FAU ubiquitin like and ribosomal protein S30 fusion b Neighboring gene si:dkey-88p24.11

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    39S ribosomal protein L49, mitochondrial; mitochondrial ribosomal protein L49

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386320.1NP_001373249.1  mitochondrial ribosomal protein L49

      Status: VALIDATED

      Source sequence(s)
      BX248510
      UniProtKB/TrEMBL
      A0A8M9PU53, A0A8N7T6Q4, E7F2U2
      Conserved Domains (1) summary
      pfam05046
      Location:92176
      Img2; Mitochondrial large subunit ribosomal protein (Img2)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      26986890..26989994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479372.1XP_021335047.1  39S ribosomal protein L49, mitochondrial

      Related
      ENSDARP00000099561.2, ENSDART00000113353.4
      Conserved Domains (1) summary
      pfam05046
      Location:92176
      Img2; Mitochondrial large subunit ribosomal protein (Img2)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394787.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      209913..213130 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_681902.7XP_686994.3  39S ribosomal protein L49, mitochondrial

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395289.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      12303..15407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474204.1XP_021329879.1  39S ribosomal protein L49, mitochondrial

      Conserved Domains (1) summary
      pfam05046
      Location:92176
      Img2; Mitochondrial large subunit ribosomal protein (Img2)