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    pabir2 PABIR family member 2 [ Danio rerio (zebrafish) ]

    Gene ID: 445072, updated on 2-Nov-2024

    Summary

    Official Symbol
    pabir2provided by ZNC
    Official Full Name
    PABIR family member 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040801-204
    See related
    Ensembl:ENSDARG00000036500 AllianceGenome:ZFIN:ZDB-GENE-040801-204
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fam122b; zgc:91872
    Summary
    Predicted to enable protein serine/threonine phosphatase inhibitor activity. Orthologous to several human genes including PABIR1 (PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See pabir2 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (31529558..31546577)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (31189180..31206263)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene hypoxanthine phosphoribosyltransferase 1 Neighboring gene microRNA 457b Neighboring gene small nucleolar RNA U109 Neighboring gene small nucleolar RNA U109 Neighboring gene motile sperm domain containing 1 Neighboring gene integrator complex subunit 6 like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    enables protein serine/threonine phosphatase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    protein FAM122B
    Names
    family with sequence similarity 122B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003466.2NP_001003466.2  protein FAM122B

      Status: VALIDATED

      Source sequence(s)
      BX511227
      Related
      ENSDARP00000053025.3, ENSDART00000053026.5

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      31529558..31546577
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005173206.4XP_005173263.1  protein FAM122B isoform X1

      UniProtKB/TrEMBL
      A0A8M2BKI5, Q6DBU0
    2. XM_005173207.4XP_005173264.1  protein FAM122B isoform X2

      UniProtKB/TrEMBL
      A0A8M2BKI8, Q6DBU0

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394915.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      85678..102681
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)