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    tmem60 transmembrane protein 60 [ Danio rerio (zebrafish) ]

    Gene ID: 445087, updated on 2-Nov-2024

    Summary

    Official Symbol
    tmem60provided by ZNC
    Official Full Name
    transmembrane protein 60provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040801-222
    See related
    Ensembl:ENSDARG00000021589 AllianceGenome:ZFIN:ZDB-GENE-040801-222
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:91811
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM60 (transmembrane protein 60). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
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    Genomic context

    See tmem60 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (21277478..21280584, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (21179824..21182893, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene ELKS/RAB6-interacting/CAST family member 1a Neighboring gene fibrinogen-like 2b Neighboring gene inner mitochondrial membrane peptidase subunit 2 Neighboring gene leucine rich repeat neuronal 3a Neighboring gene uncharacterized LOC137489352

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003481.2NP_001003481.1  transmembrane protein 60

      See identical proteins and their annotated locations for NP_001003481.1

      Status: VALIDATED

      Source sequence(s)
      CR384055, EH549068, EH549323, EH570190
      UniProtKB/TrEMBL
      A0A8M1N177, Q6DBS7
      Related
      ENSDARP00000123646.1, ENSDART00000143644.2
      Conserved Domains (1) summary
      pfam10269
      Location:25134
      Tmemb_185A; Transmembrane Fragile-X-F protein

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      21277478..21280584 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395200.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      92741..95889 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)