atp5if1b ATP synthase inhibitory factor subunit 1b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: atp5if1bprovided by ZNC
Official Full Name: ATP synthase inhibitory factor subunit 1bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050506-113
See related: Ensembl:ENSDARG00000044092 AllianceGenome:ZFIN:ZDB-GENE-050506-113
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: IF1 B; IF(1) B; atpif1b; im:6908140; zgc:153321; si:ch211-15d5.5; si:ch211-154e15.5
Summary: Predicted to enable ATPase binding activity; ATPase inhibitor activity; and protein homodimerization activity. Acts upstream of or within chordate embryonic development. Predicted to be active in mitochondrion. Is expressed in several structures, including blood; common myeloid progenitor; hatching gland; polster; and solid lens vesicle. Orthologous to human ATP5IF1 (ATP synthase inhibitory factor subunit 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 17

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (24613473..24614724)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (24595072..24596323)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fd05d01.y1 (e-PCR)
- UniSTS:194955

fi45a02.x1 (e-PCR)
- UniSTS:197553

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ATPase binding	IBA Inferred from Biological aspect of Ancestor more info
enables ATPase binding	ISS Inferred from Sequence or Structural Similarity more info
enables ATPase inhibitor activity	IBA Inferred from Biological aspect of Ancestor more info
enables ATPase inhibitor activity	IEA Inferred from Electronic Annotation more info
enables ATPase inhibitor activity	ISS Inferred from Sequence or Structural Similarity more info
enables protein homodimerization activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chordate embryonic development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in erythrocyte differentiation	ISS Inferred from Sequence or Structural Similarity more info
involved_in heme biosynthetic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in heme biosynthetic process	ISS Inferred from Sequence or Structural Similarity more info
involved_in negative regulation of ATP-dependent activity	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein homotetramerization	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
is_active_in mitochondrion	IBA Inferred from Biological aspect of Ancestor more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ATPase inhibitor B, mitochondrial

Names: ATP synthase F1 subunit epsilon B; ATPase inhibitory factor 1-like; ATPase inhibitory factor 1b; inhibitor of F(1)F(o)-ATPase B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.