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    LOC560947 uncharacterized LOC560947 [ Danio rerio (zebrafish) ]

    Gene ID: 560947, updated on 27-Mar-2024

    Summary

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    Gene symbol
    LOC560947
    Gene description
    uncharacterized LOC560947
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC560947 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (7551863..7557851)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (7522614..7528531)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 2 Neighboring gene lysine (K)-specific methyltransferase 2Ca Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) Neighboring gene ATPase H+ transporting V0 subunit a1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    adenylate cyclase, terminal-differentiation specific; putative mediator of RNA polymerase II transcription subunit 26; uncharacterized protein si:ch211-271e10.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      7551863..7557851
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021470269.1 → XP_021325944.1  uncharacterized protein si:ch211-271e10.1 isoform X5

      UniProtKB/TrEMBL
      A0A8M9PM51
      Conserved Domains (1) summary
      cl26247
      Location:15 → 213
      DNA_pol3_delta2; DNA polymerase III, delta subunit

    2. XM_009297277.3 → XP_009295552.1  putative mediator of RNA polymerase II transcription subunit 26 isoform X6

      UniProtKB/TrEMBL
      A0A8M3AVW7
      Conserved Domains (1) summary
      TIGR03835
      Location:45 → 288
      termin_org_DnaJ; terminal organelle assembly protein TopJ

    3. XM_005162551.4 → XP_005162608.1  adenylate cyclase, terminal-differentiation specific isoform X4

      UniProtKB/TrEMBL
      A0A8M2B9E9
      Conserved Domains (1) summary
      TIGR03835
      Location:45 → 288
      termin_org_DnaJ; terminal organelle assembly protein TopJ

    4. XM_005162550.4 → XP_005162607.1  putative mediator of RNA polymerase II transcription subunit 26 isoform X3

      UniProtKB/TrEMBL
      A0A8M2B9K5
      Conserved Domains (1) summary
      TIGR03835
      Location:45 → 288
      termin_org_DnaJ; terminal organelle assembly protein TopJ

    5. XM_009297272.3 → XP_009295547.1  adenylate cyclase, terminal-differentiation specific isoform X1

      UniProtKB/TrEMBL
      A0A8M3B6J4
      Conserved Domains (1) summary
      PRK14950
      Location:15 → 213
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional

    6. XM_009297273.3 → XP_009295548.1  putative mediator of RNA polymerase II transcription subunit 26 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AP38
      Conserved Domains (1) summary
      PRK14950
      Location:15 → 213
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    Nucleotide Protein
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