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    • Showing Current items.

    F20H11.1 Differentially expressed in FDCP 8 homolog [ Caenorhabditis elegans ]

    Gene ID: 175933, updated on 12-Jun-2024

    Summary

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    Gene symbol
    F20H11.1
    Gene description
    Differentially expressed in FDCP 8 homolog
    Locus tag
    CELE_F20H11.1
    See related
    AllianceGenome:WB:WBGene00017646
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in intracellular signal transduction. Orthologous to human DEF8 (differentially expressed in FDCP 8 homolog). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See F20H11.1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    8
    Sequence:
    Chromosome: III; NC_003281.10 (6589373..6592175, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Zinc finger protein 263 Neighboring gene AcetylCholine Receptor Neighboring gene D-aspartate oxidase 3 Neighboring gene ncRNA Neighboring gene Protein strawberry notch homolog Neighboring gene Malate dehydrogenase, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Differentially expressed in FDCP 8 homolog
    NP_498454.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6589373..6592175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066053.9 → NP_498454.2  Differentially expressed in FDCP 8 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498454.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O01738
      Conserved Domains (2) summary
      cd00029
      Location:161 → 212
      C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
      pfam13901
      Location:259 → 467
      zf-RING_9; Putative zinc-RING and/or ribbon
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O01738.2

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