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    C09E7.7 RING-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175930, updated on 12-Jun-2024

    Summary

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    Gene symbol
    C09E7.7
    Gene description
    RING-type domain-containing protein
    Locus tag
    CELE_C09E7.7
    See related
    AllianceGenome:WB:WBGene00015641
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in innate immune response. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See C09E7.7 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    17
    Sequence:
    Chromosome: III; NC_003281.10 (6546722..6551243, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene RING-type domain-containing protein Neighboring gene pseudo Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RING-type domain-containing protein
    NP_001368687.1
    • Confirmed by transcript evidence
    NP_001368688.1
    • Confirmed by transcript evidence
    NP_001382755.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6546722..6551243 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001395769.1 → NP_001382755.1  RING-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N5Y7
      Conserved Domains (1) summary
      COG4372
      Location:623 → 859
      COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]

    2. NM_001379771.3 → NP_001368687.1  RING-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATT5
      Conserved Domains (1) summary
      COG4372
      Location:554 → 790
      COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]

    3. NM_001379770.3 → NP_001368688.1  RING-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2K5ATV5
      Conserved Domains (1) summary
      COG4372
      Location:526 → 762
      COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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