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    CSM3 Csm3p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 855067, updated on 29-Jun-2024

    Summary

    Gene symbol
    CSM3
    Gene description
    Csm3p
    Primary source
    FungiDB:YMR048W
    Locus tag
    YMR048W
    See related
    SGD:S000004651; AllianceGenome:SGD:S000004651; VEuPathDB:YMR048W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable DNA binding activity. Involved in DNA metabolic process and nuclear division. Located in cytoplasm and nucleus. Part of replication fork protection complex. Orthologous to human TIPIN (TIMELESS interacting protein). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    See CSM3 in Genome Data Viewer
    Location:
    chromosome: XIII
    Exon count:
    1
    Sequence:
    Chromosome: XIII; NC_001145.3 (366981..367934)

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene tRNA-His Neighboring gene FG-nucleoporin NUP116 Neighboring gene Erb1p Neighboring gene tRNA-Val

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in DNA damage response IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in DNA repair IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in DNA replication checkpoint signaling IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in DNA replication checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in establishment of mitotic sister chromatid cohesion IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in establishment of mitotic sister chromatid cohesion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in maintenance of DNA repeat elements IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in meiotic chromosome segregation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in mitotic sister chromatid cohesion IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in mitotic sister chromatid cohesion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of DNA replication IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in replication fork arrest IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within replication fork arrest IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in replication fork arrest IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in replication fork processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of replication fork protection complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of replication fork protection complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    Csm3p
    NP_013763.1
    • Replication fork associated factor; required for stable replication fork pausing; component of the DNA replication checkpoint pathway; required for accurate chromosome segregation during meiosis; forms nuclear foci upon DNA replication stress

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001145.3 Reference assembly

      Range
      366981..367934
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182545.1NP_013763.1  TPA: Csm3p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_013763.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VZM3, Q04659
      UniProtKB/TrEMBL
      A0A8H4BXQ6, B5VPH7, C7GL73, C8ZEQ3
      Conserved Domains (1) summary
      pfam07962
      Location:53137
      Swi3; Replication Fork Protection Component Swi3