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    zgc:66474 zgc:66474 [ Danio rerio (zebrafish) ]

    Gene ID: 327500, updated on 19-Jun-2024

    Summary

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    Official Symbol
    zgc:66474provided by ZNC
    Official Full Name
    zgc:66474provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5711
    See related
    Ensembl:ENSDARG00000026453 AllianceGenome:ZFIN:ZDB-GENE-030131-5711
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi14f02; wu:fi14f02; si:dkey-93n13.1
    Summary
    Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See zgc:66474 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (15646191..15667734, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (15486123..15517926, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene si:dkey-93n13.2 Neighboring gene zinc finger protein 675-like Neighboring gene zgc:66443 Neighboring gene proline-rich transmembrane protein 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC327500
    Names
    zinc finger protein 726-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199815.1 → NP_956109.1  uncharacterized protein LOC327500

      See identical proteins and their annotated locations for NP_956109.1

      Status: PREDICTED

      Source sequence(s)
      BC057537
      UniProtKB/TrEMBL
      Q6PFI5
      Related
      ENSDARP00000011194.7, ENSDART00000026658.9
      Conserved Domains (4) summary
      sd00017
      Location:372 → 392
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:688 → 708
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:593 → 615
      zf-C2H2; Zinc finger, C2H2 type
      cl21478
      Location:462 → 541
      ATP-synt_B; ATP synthase B/B' CF(0)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      15646191..15667734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005163801.4 → XP_005163858.1  uncharacterized protein LOC327500 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BAX5
      Conserved Domains (3) summary
      sd00017
      Location:27 → 47
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:343 → 363
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:248 → 270
      zf-C2H2; Zinc finger, C2H2 type

    2. XM_005163802.4 → XP_005163859.1  uncharacterized protein LOC327500 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BB17, F1RDM3
      Related
      ENSDARP00000099289.2, ENSDART00000115022.4
      Conserved Domains (2) summary
      smart00614
      Location:362 → 408
      ZnF_BED; BED zinc finger
      sd00017
      Location:176 → 196
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394524.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      309260..312848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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