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    stk40 serine/threonine kinase 40 [ Danio rerio (zebrafish) ]

    Gene ID: 564859, updated on 19-Jun-2024

    Summary

    Official Symbol
    stk40provided by ZNC
    Official Full Name
    serine/threonine kinase 40provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4831
    See related
    Ensembl:ENSDARG00000098135 AllianceGenome:ZFIN:ZDB-GENE-030131-4831
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb988; fd99h11; wu:fd99h11
    Summary
    Predicted to enable ATP binding activity; protein serine kinase activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm and nucleus. Is expressed in axis; hindbrain neural plate; mesoderm; optic primordium; and optic vesicle. Orthologous to human STK40 (serine/threonine kinase 40). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    See stk40 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (36035086..36073145, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (36465355..36490700)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene SH3 domain containing 21 Neighboring gene eva-1 homolog Ba (C. elegans) Neighboring gene organic solute carrier partner 1b Neighboring gene mitochondrial ribosomal protein S15

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    serine/threonine-protein kinase 40
    XP_021322631.1
    XP_021322632.1
    XP_693275.6

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      36035086..36073145 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466957.1XP_021322632.1  serine/threonine-protein kinase 40 isoform X2

      UniProtKB/TrEMBL
      A0A8M9NZS1
      Related
      ENSDARP00000152314.1, ENSDART00000182584.1
      Conserved Domains (1) summary
      cd13974
      Location:68359
      STKc_SHIK; Catalytic domain of the Serine/Threonine kinase, SINK-homologous inhibitory kinase
    2. XM_021466956.1XP_021322631.1  serine/threonine-protein kinase 40 isoform X1

      UniProtKB/TrEMBL
      A0A8M9NZS1
      Conserved Domains (1) summary
      cd13974
      Location:68359
      STKc_SHIK; Catalytic domain of the Serine/Threonine kinase, SINK-homologous inhibitory kinase
    3. XM_688183.9XP_693275.6  serine/threonine-protein kinase 40 isoform X3

      UniProtKB/TrEMBL
      A0A0R4IDK5, A0A8N7UV17
      Related
      ENSDARP00000130758.2, ENSDART00000158358.2