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    mgarpb mitochondria localized glutamic acid rich protein b [ Danio rerio (zebrafish) ]

    Gene ID: 100002387, updated on 2-Nov-2024

    Summary

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    Official Symbol
    mgarpbprovided by ZNC
    Official Full Name
    mitochondria localized glutamic acid rich protein bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130530-930
    See related
    AllianceGenome:ZFIN:ZDB-GENE-130530-930
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    mgarp
    Summary
    Predicted to act upstream of or within anterograde axonal transport. Predicted to be located in mitochondrion. Orthologous to human MGARP (mitochondria localized glutamic acid rich protein). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See mgarpb in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (13997131..14014743, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (13311786..13328423, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489979 Neighboring gene nocturnin b Neighboring gene E74-like factor 2b (ets domain transcription factor) Neighboring gene histone PARylation factor 1 Neighboring gene ankyrin 2a, neuronal Neighboring gene uncharacterized LOC101887098

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene Characterization of Nocturnin Paralogues in Goldfish: Full Coding Sequences, Structure, Phylogeny and Tissue Expression. Madera D, et al. Int J Mol Sci, 2023 Dec 19. PMID 38203224, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within anterograde axonal transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein MGARP
    Names
    mitochondria-localized glutamic acid-rich protein
    zmp:0000000927

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      13997131..14014743 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003197634.6 → XP_003197682.1  protein MGARP

      UniProtKB/TrEMBL
      A0A8M1RSA4
      Conserved Domains (1) summary
      pfam14962
      Location:1 → 157
      AIF-MLS; Mitochondria Localization Sequence

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394465.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      199725..215137 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471118.2 → XP_021326793.1  protein MGARP

      UniProtKB/TrEMBL
      A0A8M9PIM1
      Conserved Domains (1) summary
      pfam14962
      Location:1 → 157
      AIF-MLS; Mitochondria localization Sequence
    Nucleotide Protein Strain
    Heading Accession and Version

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