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    acot20 acyl-CoA thioesterase 20 [ Danio rerio (zebrafish) ]

    Gene ID: 553440, updated on 27-Mar-2024

    Summary

    Official Symbol
    acot20provided by ZNC
    Official Full Name
    acyl-CoA thioesterase 20provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041001-182
    See related
    Ensembl:ENSDARG00000042510 AllianceGenome:ZFIN:ZDB-GENE-041001-182
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-11e23.4
    Summary
    Predicted to enable acyl-CoA hydrolase activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid metabolic process. Predicted to act upstream of or within lipid metabolic process. Is expressed in liver. Orthologous to several human genes including ACOT1 (acyl-CoA thioesterase 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    See acot20 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (28935385..28941112)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (29032515..29038233)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene serine and arginine rich splicing factor 5b Neighboring gene sushi domain containing 6 Neighboring gene acyl-CoA thioesterase 21 Neighboring gene G protein-coupled receptor 176

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables fatty acyl-CoA hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables thiolester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in acyl-CoA metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within acyl-CoA metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in fatty acid metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    acyl-coenzyme A thioesterase 1; uncharacterized protein LOC553440
    Names
    CTE1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      28935385..28941112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_691619.6XP_696711.3  acyl-coenzyme A thioesterase 1

      UniProtKB/TrEMBL
      A0A8N7URB7, Q5SPG8
      Related
      ENSDARP00000062337.4, ENSDART00000062338.5
      Conserved Domains (2) summary
      pfam04775
      Location:40154
      Bile_Hydr_Trans; Acyl-CoA thioester hydrolase/BAAT N-terminal region
      pfam08840
      Location:221430
      BAAT_C; BAAT / Acyl-CoA thioester hydrolase C terminal