U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RAB9BP1 RAB9B, member RAS oncogene family pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 9366, updated on 10-Oct-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    RAB9BP1provided by HGNC
    Official Full Name
    RAB9B, member RAS oncogene family pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:9793
    See related
    Ensembl:ENSG00000232159 AllianceGenome:HGNC:9793
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RAB9P1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    5q21.2-q21.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (105099474..105100098)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (105603685..105604309)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (104435175..104435799)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379109 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:103985884-103986480 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:104089973-104090787 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_80715 Neighboring gene RNA, U6 small nuclear 334, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:104287201-104287702 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:104287703-104288202 Neighboring gene MPRA-validated peak5386 silencer Neighboring gene uncharacterized LOC105379110 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:104727399-104728228 Neighboring gene MPRA-validated peak5387 silencer Neighboring gene Sharpr-MPRA regulatory region 1662 Neighboring gene RNA, 5S ribosomal pseudogene 189

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cloning and mapping of human Rab7 and Rab9 cDNA sequences and identification of a Rab9 pseudogene. Davies JP, et al. Genomics, 1997 Apr 1. PMID 9126495
    2. Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese. He J, et al. Circ Cardiovasc Genet, 2013 Dec. PMID 24165912, Free PMC Article
    3. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. Low SK, et al. Cancer Sci, 2013 Aug. PMID 23648065, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.
    EBI GWAS Catalog
    Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
    EBI GWAS Catalog

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

    Go to the top of the page Help

    Markers

    Other Names

    • RAB9, member RAS oncogene family, pseudogene 1
    • RAB9A, member RAS oncogene family pseudogene

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_000039.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091987
      Related
      ENST00000519581.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      105099474..105100098
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      105603685..105604309
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_004250.1: Suppressed sequence

      Description
      NM_004250.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.