Clinical Genetic Test
offered by
GTR Test Accession:
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GTR000070509.3
Last updated in GTR:
2015-02-09
View version history
GTR000070509.3,
last updated:
2015-02-09
GTR000070509.2,
last updated:
2013-03-15
GTR000070509.1,
registered in GTR:
2013-03-15
Last annual review date for the lab: 2021-09-15
Past due
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At a Glance
Test purpose:
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Diagnosis;
Screening
Conditions (4):
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Rhizomelic chondrodysplasia punctata type 1;
Peroxisome biogenesis disorder;
Rhizomelic chondrodysplasia punctata type 2
more...
Analytes (3):
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Phytanic acid;
Plasmalogen;
Very long chain fatty acid
Methods (1):
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Biochemical Genetics - Analyte: Metabolite levels
Target population: Help
rhizomelic chondrodysplasia punctata
Clinical validity:
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Patients with low levels of red blood cell plasmalogens are …
Clinical utility:
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Establish or confirm diagnosis
Ordering Information
Offered by:
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Test short name:
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RBC plasmalogens
Specimen Source:
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- Peripheral (whole) blood
- View specimen requirements
Who can order: Help
- Genetic Counselor
- Health Care Provider
- Licensed Physician
- Nurse Practitioner
- Physician Assistant
- Registered Nurse
Contact Policy:
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Laboratory can only accept contact from health care providers. Patients/families are encouraged to discuss genetic testing options with their health care provider.
How to Order:
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1.0 to 3.0 ml of whole EDTA blood sent at room temperature overnight to arrive Monday through Friday.
Order URL
Order URL
Test service:
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Clinical Testing/Confirmation of Mutations Identified Previously
Test development:
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Test developed by laboratory but exempt from FDA oversight (eg. NYS CLEP approved, offered within a hospital or clinic)
Informed consent required:
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No
Test strategy:
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children with congenital cataracts, rhizomelic shortening, stippling, with or without increased plasma very long chain fatty acids, and with or without increased phytanic acid
View citations (3)
- Braverman NE, Steinberg SJ, Fallatah W, Duker A, Bober MB. Rhizomelic Chondrodysplasia Punctata Type 1. 2001 Nov 16 [updated 2020 Jan 30]. In: Adam MP, Feldman J, Mirzaa GM, Pagon RA, Wallace SE, Amemiya A, editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2024. PMID: 20301447.
- Poll-The BT, Gärtner J. Clinical diagnosis, biochemical findings and MRI spectrum of peroxisomal disorders. Biochim Biophys Acta. 2012;1822(9):1421-9. doi:10.1016/j.bbadis.2012.03.011. Epub 2012 Mar 28. PMID: 22483868.
- https://www.ncbi.nlm.nih.gov/books/NBK1270
Pre-test genetic counseling required:
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Yes
Post-test genetic counseling required:
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Yes
Recommended fields not provided:
Test Order Code,
Lab contact for this test
Conditions
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Total conditions: 4
Condition/Phenotype | Identifier |
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Test Targets
Analytes
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Total analytes: 3
Analyte | Associated Condition |
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Methodology
Total methods: 1
Method Category
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Test method
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Instrument
Analyte
Metabolite levels
Agilent 6890 capillary gas chromatograph
Clinical Information
Test purpose:
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Diagnosis;
Screening
Clinical validity:
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Patients with low levels of red blood cell plasmalogens are associated with defects in peroxisomal plasmalogen synthesis; confirmed by testing plasmalogen synthesis enzymes in cultured skin fibroblasts and mutation analyses in one of the three genes associated with RCDP and one of the more than 16 genes associated with the …
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View citations (1)
- Braverman NE, Moser AB. Functions of plasmalogen lipids in health and disease. Biochim Biophys Acta. 2012;1822(9):1442-52. doi:10.1016/j.bbadis.2012.05.008. Epub 2012 May 22. PMID: 22627108.
Clinical utility:
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Establish or confirm diagnosis
View citations (1)
- Braverman NE, Moser AB. Functions of plasmalogen lipids in health and disease. Biochim Biophys Acta. 2012;1822(9):1442-52. doi:10.1016/j.bbadis.2012.05.008. Epub 2012 May 22. PMID: 22627108.
Target population:
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rhizomelic chondrodysplasia punctata
View citations (1)
- Braverman NE, Moser AB. Functions of plasmalogen lipids in health and disease. Biochim Biophys Acta. 2012;1822(9):1442-52. doi:10.1016/j.bbadis.2012.05.008. Epub 2012 May 22. PMID: 22627108.
Variant Interpretation:
What is the protocol for interpreting a variation as a VUS?
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If red blood cell plasmalogen content is slightly lower than normal and the red blood cells were prepared by an outside laboratory, then the results are in question.
If red blood cell plasmalogen content is slightly lower than normal and the red blood cells were prepared by an outside laboratory, then the results are in question.
Are family members with defined clinical status recruited to assess significance of VUS without charge?
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No.
No.
Will the lab re-contact the ordering physician if variant interpretation changes?
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Yes. results of analysis of repeat specimen are reported by phone and faxed to the referring laboratory/physician
Yes. results of analysis of repeat specimen are reported by phone and faxed to the referring laboratory/physician
Sample reports:
Sample Negative Report
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Sample Negative Report
Sample Positive Report Help
Sample Positive Report
Sample Negative Report
Sample Positive Report Help
Sample Positive Report
Recommended fields not provided:
Is research allowed on the sample after clinical testing is complete?
Technical Information
Test Procedure:
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Preparation of washed red blood cells from whole EDTA blood. Extraction of red blood cells with hexane:isopropanol, centrifuge, dry the solvent layer, add 1.0N methanolic HCL, incubate at 75 deg C. for 2 hours, extract dimethylacetals with hexane , inject on 50meter DB-1 capillary column and measure 16:0, 18:0 and …
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View citations (1)
- Plasma and red blood cell fatty acids in peroxisomal disorders. Moser AB, et al. Neurochem Res. 1999;24(2):187-97. doi:10.1023/a:1022549618333. PMID: 9972864.
Test Confirmation:
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All abnormal tests are confirmed by retesting a new aliquot of the original sample using two different capillary columns differing in polarity.
Test Comments:
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In order to define the type of rhizomelic chondrodysplasia puncatata, biochemical testing of plasmalogen synthesis enzymes assays and phytanic acid oxidase are performed using cultured skin fibroblasts.
Availability:
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Tests performed
Entire test performed in-house
Entire test performed in-house
Analytical Validity:
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More than 100 control speciimens were tested to determine the range of normal; more than 25 samples from patients known to have peroxisomal plasmalogen synthesis defects were tested to determine the abnormal range. The same normal red blood cell control ( from Red Cross) and abnormal red blood cell ( …
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Assay limitations:
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Red blood cells prepared outside of our laboratory may not be washed and/or stored properly and may give falsely low levels of plasmalogens.
Proficiency testing (PT):
Is proficiency testing performed for this test?
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Yes
Method used for proficiency testing: Help
Inter-Laboratory
PT Provider: Help
Biochemical Genetics Laboartory in Amsterdam
Description of PT method: Help
sample exchange
Description of internal test validation method: Help
The same normal red blood cell control ( from Red Cross) and abnormal red blood cell ( from dog blood) are assayed with each batch of samples. For the set of analyses to be valid the normal and abnormal must fall within the specified range (trend analysis).
Yes
Method used for proficiency testing: Help
Inter-Laboratory
PT Provider: Help
Biochemical Genetics Laboartory in Amsterdam
Description of PT method: Help
sample exchange
Description of internal test validation method: Help
The same normal red blood cell control ( from Red Cross) and abnormal red blood cell ( from dog blood) are assayed with each batch of samples. For the set of analyses to be valid the normal and abnormal must fall within the specified range (trend analysis).
VUS:
Software used to interpret novel variations
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proprietary internal software
Laboratory's policy on reporting novel variations Help
call referring laboratory/physician and fax report, requesting a new sample
proprietary internal software
Laboratory's policy on reporting novel variations Help
call referring laboratory/physician and fax report, requesting a new sample
Recommended fields not provided:
Citations to support assay limitations,
Citations to support internal test validation method,
Citations for Analytical validity,
Major CAP category, CAP category, CAP test list
Regulatory Approval
FDA Review:
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Category:
FDA exercises enforcement discretion
Additional Information
Clinical resources:
Molecular resources:
IMPORTANT NOTE:
NIH does not independently verify information submitted to GTR; it relies on submitters to provide information that is accurate and not misleading.
NIH makes no endorsements of tests or laboratories listed in GTR. GTR is not a substitute for medical advice.
Patients and consumers
with specific questions about a genetic test should contact a health care provider or a genetics professional.