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    LOC100876265 mutS protein homolog 4-like [ Megachile rotundata (alfalfa leafcutting bee) ]

    Gene ID: 100876265, updated on 1-Oct-2024

    Summary

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    Gene symbol
    LOC100876265
    Gene description
    mutS protein homolog 4-like
    See related
    EnsemblRapid:LOC100876265
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Megachile rotundata
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Megachile
    Orthologs
    honey bee all
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    Genomic context

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    See LOC100876265 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current MROT_1.0 (GCF_000220905.1) Unplaced Scaffold NW_003797055.1 (980094..984619, complement)

    NW_003797055.1Genomic Context describing neighboring genes Neighboring gene LYR motif-containing protein 9-like Neighboring gene probable tRNA (uracil-O(2)-)-methyltransferase Neighboring gene zinc finger protein 236 Neighboring gene Rho GTPase activating protein at 19D Neighboring gene uncharacterized LOC105661775 Neighboring gene uncharacterized LOC105661772 Neighboring gene protein scarlet

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003797055.1 Unplaced Scaffold Reference MROT_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mismatched DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mismatch repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mutS protein homolog 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Megachile rotundata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MROT_1.0

    Genomic

    1. NW_003797055.1 Reference MROT_1.0

      Range
      980094..984619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012280312.1 → XP_012135702.1  mutS protein homolog 4-like

      Related
      XP_012135702.1, XM_012280312.1
      Conserved Domains (3) summary
      smart00533
      Location:273 → 622
      MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
      pfam05192
      Location:260 → 341
      MutS_III; MutS domain III
      cl21455
      Location:600 → 859
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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