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    si:dkey-28a3.2 si:dkey-28a3.2 [ Danio rerio (zebrafish) ]

    Gene ID: 101884625, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:dkey-28a3.2provided by ZNC
    Official Full Name
    si:dkey-28a3.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141216-60
    See related
    Ensembl:ENSDARG00000104840 AllianceGenome:ZFIN:ZDB-GENE-141216-60
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in negative regulation of transcription, DNA-templated. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See si:dkey-28a3.2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (17782536..17801883)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (17530587..17549469)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110439929 Neighboring gene reticulon 3 Neighboring gene zinc finger translocation associated Neighboring gene ECSIT signaling integrator Neighboring gene EMAP like 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:dkey-28a3.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      17782536..17801883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009303002.3 → XP_009301277.1  uncharacterized protein si:dkey-28a3.2

      See identical proteins and their annotated locations for XP_009301277.1

      UniProtKB/TrEMBL
      A0A0R4IFW6, A0A8M3AU01
      Related
      ENSDARP00000133793.2, ENSDART00000165110.3
      Conserved Domains (1) summary
      pfam08961
      Location:557 → 702
      DUF1875; Domain of unknown function (DUF1875)

    2. XM_009303003.3 → XP_009301278.1  uncharacterized protein si:dkey-28a3.2

      See identical proteins and their annotated locations for XP_009301278.1

      UniProtKB/TrEMBL
      A0A0R4IFW6, A0A8M3AU01
      Conserved Domains (1) summary
      pfam08961
      Location:557 → 702
      DUF1875; Domain of unknown function (DUF1875)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases