U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC107875551 histone H4 [ Capsicum annuum ]

    Gene ID: 107875551, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC107875551
    Gene description
    histone H4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Capsicum annuum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
    Also known as
    CaH4
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC107875551 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current UCD10Xv1.1 (GCF_002878395.1) 6 NC_061116.1 (222280034..222280627, complement)
    100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 6 NC_029982.1 (6567259..6567814)

    Chromosome 6 - NC_061116.1Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene histone H4 Neighboring gene uncharacterized protein DDB_G0290685-like Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene uncharacterized protein DDB_G0290685-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Induction of reproductive organ-preferential histone genes by wounding or methyl jasmonate. Kim SA, et al. Mol Cells, 1998 Dec 31. PMID 9895118
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    histone H4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398351.1 → NP_001385280.1  histone H4

      Status: VALIDATED

      Source sequence(s)
      BM066872, JW079334
      UniProtKB/Swiss-Prot
      Q71V09
      UniProtKB/TrEMBL
      A0A1U8E1T0
      Conserved Domains (1) summary
      PLN00035
      Location:1 → 103
      PLN00035; histone H4; Provisional

    RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCD10Xv1.1 Primary Assembly

    Genomic

    1. NC_061116.1 Reference UCD10Xv1.1 Primary Assembly

      Range
      222280034..222280627 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q71V09.3 GenPept UniProtKB/Swiss-Prot:Q71V09

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases