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Source database (GenBank or RefSeq) File type

UCD10Xv1.1

Organism name:

Capsicum annuum (eudicots)

Infraspecific name:

Cultivar: UCD-10X-F1

BioSample:

SAMN06445824

BioProject:

PRJNA376668

Submitter:

University of California, Davis

Date:

2018/01/30

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_002878395.3 (latest)

RefSeq assembly accession:

GCF_002878395.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

NPHV01

Assembly method:

Supernova v. 1.1-Chili-Pepper

Expected final version:

yes

Genome coverage:

56.0x

Sequencing technology:

Illumina HiSeq

IDs: 12296591 [UID] 32214908 [GenBank] 32220628 [RefSeq]

See Genome Information for Capsicum annuum

Pathogen Detection Resources

There are 23 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002878395.3	≠	GCF_002878395.1	UCD10Xv1.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_002878395.2	n/a	n/a	UCD10Xv1.0	Chromosome	Replaced GenBank
GCA_002878395.1	n/a	n/a	UCD10Xv1.0	Scaffold	Replaced GenBank

Comment

In March 2022 178 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	3,212,488,018
Total ungapped length	3,124,702,730
Gaps between scaffolds	0
Number of scaffolds	81,202
Scaffold N50	227,195,441
Scaffold L50	7
Number of contigs	133,779
Contig N50	122,840
Contig L50	6,629
Total number of chromosomes and plasmids	14
Number of component sequences (WGS or clone)	81,202

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM009386.1	=	NC_061111.1	0
Chromosome 2	CM009387.1	=	NC_061112.1	0
Chromosome 3	CM009388.1	=	NC_061113.1	0
Chromosome 4	CM009389.1	=	NC_061114.1	0
Chromosome 5	CM009390.1	=	NC_061115.1	0
Chromosome 6	CM009391.1	=	NC_061116.1	0
Chromosome 7	CM009392.1	=	NC_061117.1	0
Chromosome 8	CM009393.1	=	NC_061118.1	0
Chromosome 9	CM009394.1	=	NC_061119.1	0
Chromosome 10	CM009395.1	=	NC_061120.1	0
Chromosome 11	CM009396.1	=	NC_061121.1	0
Chromosome 12	CM009397.1	=	NC_061122.1	0
unplaced	n/a	n/a	n/a	81,188

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	KJ865410.1	=	NC_024624.1
Chloroplast Pltd	JX270811.1	=	NC_018552.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	3,211,819,707	81,200	3,124,034,419	227,195,441	52,577
Chromosome 1	255,602,192	1	247,646,061	255,602,192	4,197
Chromosome 2	154,330,250	1	149,570,657	154,330,250	2,597
Chromosome 3	270,589,393	1	263,376,473	270,589,393	3,933
Chromosome 4	231,497,844	1	226,320,062	231,497,844	2,837
Chromosome 5	221,136,838	1	215,314,608	221,136,838	3,044
Chromosome 6	228,254,876	1	222,374,776	228,254,876	3,166
Chromosome 7	227,195,441	1	220,781,514	227,195,441	3,393
Chromosome 8	173,776,113	1	169,949,657	173,776,113	2,138
Chromosome 9	219,064,469	1	211,861,592	219,064,469	3,713
Chromosome 10	221,721,387	1	216,234,836	221,721,387	3,028
Chromosome 11	235,950,708	1	228,212,795	235,950,708	3,753
Chromosome 12	232,995,803	1	227,464,487	232,995,803	3,066
unplaced	539,704,393	81,188	524,926,901	82,456	13,712

Molecule	Total Length
All	668,311
Mitochondrion MT	511,530
Chloroplast Pltd	156,781

Assembly

Genome Assembly

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UCD10Xv1.1

See Genome Information for Capsicum annuum

Pathogen Detection Resources

There are 23 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear