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    LOC107875664 capsanthin/capsorubin synthase, chromoplastic [ Capsicum annuum ]

    Gene ID: 107875664, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC107875664
    Gene description
    capsanthin/capsorubin synthase, chromoplastic
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Capsicum annuum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
    Also known as
    Ccs
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    Genomic context

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    See LOC107875664 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current UCD10Xv1.1 (GCF_002878395.1) 6 NC_061116.1 (219128341..219129837, complement)
    100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 6 NC_029982.1 (9497216..9500911)

    Chromosome 6 - NC_061116.1Genomic Context describing neighboring genes Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 Neighboring gene casparian strip membrane protein 2 Neighboring gene vesicle-associated membrane protein 714 Neighboring gene uncharacterized LOC107875662

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Induction and control of chromoplast-specific carotenoid genes by oxidative stress. Bouvier F, et al. J Biol Chem, 1998 Nov 13. PMID 9804838
    2. Xanthophyll biosynthesis in chromoplasts: isolation and molecular cloning of an enzyme catalyzing the conversion of 5,6-epoxycarotenoid into ketocarotenoid. Bouvier F, et al. Plant J, 1994 Jul. PMID 7920703
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carotenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    capsanthin/capsorubin synthase, chromoplastic
    Names
    capsanthin/capsorubin synthase protein
    capsanthin/capsorubin sythase
    putative chromoplastic oxydo-reductase
    NP_001311998.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001325069.1 → NP_001311998.1  capsanthin/capsorubin synthase, chromoplastic

      Status: PROVISIONAL

      Source sequence(s)
      KM262816
      UniProtKB/Swiss-Prot
      A0A089N971, A0A089NBH9, A0A1U8H3A2, Q39470, Q42435
      UniProtKB/TrEMBL
      D7P8N1
      Conserved Domains (1) summary
      PLN02463
      Location:53 → 497
      PLN02463; lycopene beta cyclase

    RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCD10Xv1.1 Primary Assembly

    Genomic

    1. NC_061116.1 Reference UCD10Xv1.1 Primary Assembly

      Range
      219128341..219129837 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q42435.2 GenPept UniProtKB/Swiss-Prot:Q42435

    Gene LinkOut

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