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    plcb1l phospholipase C beta 1-like [ Denticeps clupeoides (denticle herring) ]

    Gene ID: 114802970, updated on 15-Mar-2024

    Summary

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    Gene symbol
    plcb1l
    Gene description
    phospholipase C beta 1-like
    See related
    Ensembl:ENSDCDG00000027375
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Denticeps clupeoides
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Denticipitoidei; Denticipitidae; Denticeps
    Orthologs
    zebrafish all
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    Genomic context

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    See plcb1l in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    100 current fDenClu1.1 (GCF_900700375.1) 14 NC_041720.1 (13640040..13731815, complement)

    Chromosome 14 - NC_041720.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain-containing protein 63-like Neighboring gene phospholipase C beta 4 Neighboring gene uncharacterized LOC114802971 Neighboring gene bone morphogenetic protein 2b Neighboring gene FERM domain containing kindlin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041720.1 Chromosome 14 Reference fDenClu1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol phospholipase C activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in memory IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol-mediated signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Denticeps clupeoides Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fDenClu1.1

    Genomic

    1. NC_041720.1 Reference fDenClu1.1

      Range
      13640040..13731815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029002146.1 → XP_028857979.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-like isoform X1

      UniProtKB/TrEMBL
      A0A8C4CA44
      Related
      ENSDCDP00000050753.1, ENSDCDT00000062449.1
      Conserved Domains (6) summary
      cd00275
      Location:706 → 825
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:316 → 672
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:22 → 149
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      pfam08703
      Location:1047 → 1199
      PLC-beta_C; PLC-beta C terminal
      cd16208
      Location:154 → 304
      EFh_PI-PLCbeta1; EF-hand motif found in phosphoinositide phospholipase C beta 1 (PI-PLC-beta1)
      pfam17380
      Location:879 → 1176
      DUF5401; Family of unknown function (DUF5401)

    2. XM_029002147.1 → XP_028857980.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-like isoform X2

      UniProtKB/TrEMBL
      A0A8C4CA44
      Conserved Domains (6) summary
      cd00275
      Location:706 → 825
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:316 → 672
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:22 → 149
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      pfam08703
      Location:1047 → 1164
      PLC-beta_C; PLC-beta C terminal
      cd16208
      Location:154 → 304
      EFh_PI-PLCbeta1; EF-hand motif found in phosphoinositide phospholipase C beta 1 (PI-PLC-beta1)
      pfam17380
      Location:879 → 1176
      DUF5401; Family of unknown function (DUF5401)

    3. XM_029002148.1 → XP_028857981.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-like isoform X3

      UniProtKB/TrEMBL
      A0A8C4CAG2
      Related
      ENSDCDP00000051049.1, ENSDCDT00000062764.1
      Conserved Domains (6) summary
      pfam11498
      Location:881 → 1003
      Activator_LAG-3; Transcriptional activator LAG-3
      cd00275
      Location:706 → 825
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:316 → 672
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:22 → 149
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16208
      Location:154 → 304
      EFh_PI-PLCbeta1; EF-hand motif found in phosphoinositide phospholipase C beta 1 (PI-PLC-beta1)
      pfam06631
      Location:929 → 972
      DUF1154; Protein of unknown function (DUF1154)
    Nucleotide Protein
    Heading Accession and Version

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