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    UBAP2 ubiquitin associated protein 2 [ Rhinatrema bivittatum (two-lined caecilian) ]

    Gene ID: 115078308, updated on 17-Mar-2024

    Summary

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    Gene symbol
    UBAP2
    Gene description
    ubiquitin associated protein 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhinatrema bivittatum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
    Orthologs
    human mouse all
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    Genomic context

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    See UBAP2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    100 current aRhiBiv1.1 (GCF_901001135.1) 1 NC_042615.1 (807813648..808410856, complement)

    Chromosome 1 - NC_042615.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 pex4-like Neighboring gene ubiquitin-conjugating enzyme E2 R2-like Neighboring gene small nucleolar RNA SNORD121A Neighboring gene small nucleolar RNA SNORD121A Neighboring gene DDB1 and CUL4 associated factor 12 Neighboring gene ubiquitin associated protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042615.1 Chromosome 1 Reference aRhiBiv1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: ubiquitin-associated protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aRhiBiv1.1 Primary Assembly

    Genomic

    1. NC_042615.1 Reference aRhiBiv1.1 Primary Assembly

      Range
      807813648..808410856 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029581175.1 → XP_029437035.1  LOW QUALITY PROTEIN: ubiquitin-associated protein 2

      Conserved Domains (2) summary
      cd14277
      Location:51 → 88
      UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
      pfam12478
      Location:485 → 514
      DUF3697; Ubiquitin-associated protein 2
    Nucleotide Protein
    Heading Accession and Version

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