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    TRIM3 tripartite motif containing 3 [ Geotrypetes seraphini ]

    Gene ID: 117363215, updated on 19-Mar-2024

    Summary

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    Gene symbol
    TRIM3
    Gene description
    tripartite motif containing 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Geotrypetes seraphini
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM3 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current aGeoSer1.1 (GCF_902459505.1) 6 NC_047089.1 (339879..509569, complement)

    Chromosome 6 - NC_047089.1Genomic Context describing neighboring genes Neighboring gene dachsous cadherin-related 1 Neighboring gene FH2 domain-containing protein 1-like Neighboring gene ARF interacting protein 2 Neighboring gene translocase of inner mitochondrial membrane 10B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047089.1 Chromosome 6 Reference aGeoSer1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aGeoSer1.1 Primary Assembly

    Genomic

    1. NC_047089.1 Reference aGeoSer1.1 Primary Assembly

      Range
      339879..509569 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033950641.1 → XP_033806532.1  tripartite motif-containing protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A6P8RM74
      Conserved Domains (6) summary
      smart00502
      Location:159 → 283
      BBC; B-Box C-terminal domain
      smart00557
      Location:323 → 422
      IG_FLMN; Filamin-type immunoglobulin domains
      COG5432
      Location:10 → 101
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
      cd14960
      Location:469 → 742
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cl00034
      Location:109 → 154
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:19 → 63
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_033950640.1 → XP_033806531.1  tripartite motif-containing protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A6P8RMS2
      Conserved Domains (6) summary
      smart00502
      Location:159 → 283
      BBC; B-Box C-terminal domain
      smart00557
      Location:323 → 422
      IG_FLMN; Filamin-type immunoglobulin domains
      COG5432
      Location:10 → 101
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
      cd14960
      Location:469 → 746
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cl00034
      Location:109 → 154
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:19 → 63
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. XM_033950638.1 → XP_033806529.1  tripartite motif-containing protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A6P8RMI0
      Conserved Domains (6) summary
      smart00502
      Location:159 → 283
      BBC; B-Box C-terminal domain
      smart00557
      Location:323 → 422
      IG_FLMN; Filamin-type immunoglobulin domains
      COG5432
      Location:10 → 101
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
      cd14960
      Location:469 → 781
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cd19825
      Location:109 → 154
      Bbox2_TRIM3_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 3 (TRIM3)
      cl17238
      Location:19 → 63
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    4. XM_033950634.1 → XP_033806525.1  tripartite motif-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A6P8RMG8
      Conserved Domains (6) summary
      smart00502
      Location:159 → 283
      BBC; B-Box C-terminal domain
      smart00557
      Location:323 → 422
      IG_FLMN; Filamin-type immunoglobulin domains
      COG5432
      Location:10 → 101
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
      cd14960
      Location:469 → 785
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cd19825
      Location:109 → 154
      Bbox2_TRIM3_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 3 (TRIM3)
      cl17238
      Location:19 → 63
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    5. XM_033950635.1 → XP_033806526.1  tripartite motif-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A6P8RMG8
      Conserved Domains (6) summary
      smart00502
      Location:159 → 283
      BBC; B-Box C-terminal domain
      smart00557
      Location:323 → 422
      IG_FLMN; Filamin-type immunoglobulin domains
      COG5432
      Location:10 → 101
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
      cd14960
      Location:469 → 785
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cd19825
      Location:109 → 154
      Bbox2_TRIM3_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 3 (TRIM3)
      cl17238
      Location:19 → 63
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    6. XM_033950637.1 → XP_033806528.1  tripartite motif-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A6P8RMG8
      Conserved Domains (6) summary
      smart00502
      Location:159 → 283
      BBC; B-Box C-terminal domain
      smart00557
      Location:323 → 422
      IG_FLMN; Filamin-type immunoglobulin domains
      COG5432
      Location:10 → 101
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
      cd14960
      Location:469 → 785
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cd19825
      Location:109 → 154
      Bbox2_TRIM3_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 3 (TRIM3)
      cl17238
      Location:19 → 63
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    7. XM_033950639.1 → XP_033806530.1  tripartite motif-containing protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A6P8RM96
      Conserved Domains (5) summary
      smart00502
      Location:136 → 260
      BBC; B-Box C-terminal domain
      smart00557
      Location:300 → 399
      IG_FLMN; Filamin-type immunoglobulin domains
      cd14960
      Location:446 → 762
      NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
      cd19825
      Location:86 → 131
      Bbox2_TRIM3_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 3 (TRIM3)
      cl17238
      Location:21 → 40
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    RNA

    1. XR_004539999.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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