Mrpl30 mitochondrial ribosomal protein L30 [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Mrpl30provided by RGD
Full Name: mitochondrial ribosomal protein L30provided by RGD
Primary source: RGD:1308196
See related: EnsemblRapid:ENSRNOG00000049330 AllianceGenome:RGD:1308196
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in mitochondrion. Orthologous to human MRPL30 (mitochondrial ribosomal protein L30). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Heart (RPKM 94.9), Muscle (RPKM 78.7) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 9q21

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	9	NC_086027.1 (47621226..47631986)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	9	NC_051344.1 (40125352..40136189)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	9	NC_005108.4 (44483809..44496116)

Chromosome 9 - NC_086027.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of large ribosomal subunit	IEA Inferred from Electronic Annotation more info
part_of mitochondrial large ribosomal subunit	ISO Inferred from Sequence Orthology more info
part_of mitochondrial large ribosomal subunit	ISS Inferred from Sequence or Structural Similarity more info
is_active_in mitochondrion	IBA Inferred from Biological aspect of Ancestor more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: large ribosomal subunit protein uL30m

Names: 39S ribosomal protein L30, mitochondrial; 39S ribosomal protein L30, mitochondrial-like; L30mt; MRP-L30

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001106903.2 → NP_001100373.1 large ribosomal subunit protein uL30m precursor

See identical proteins and their annotated locations for NP_001100373.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000009

UniProtKB/Swiss-Prot

P0C2C1

UniProtKB/TrEMBL

A0A8L2R012, B5DEY4

Related

ENSRNOP00000067807.3, ENSRNOT00000075242.4

Conserved Domains (1) summary

cd01658
Location:67 → 120

Ribosomal_L30; Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that ...
NM_001431990.1 → NP_001418919.1 large ribosomal subunit protein uL30m precursor

Status: VALIDATED

Source sequence(s)

JAXUCZ010000009

UniProtKB/Swiss-Prot

P0C2C1

UniProtKB/TrEMBL

B5DEY4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086027.1 Reference GRCr8

Range

47621226..47631986

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_008767056.4 → XP_008765278.1 large ribosomal subunit protein uL30m isoform X1

Conserved Domains (1) summary

cd01658
Location:67 → 120

Ribosomal_L30; Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that ...
XM_039083224.2 → XP_038939152.1 large ribosomal subunit protein uL30m isoform X1

UniProtKB/Swiss-Prot

P0C2C1

UniProtKB/TrEMBL

A0A8L2R012, B5DEY4

Related

ENSRNOP00000083246.1, ENSRNOT00000110341.2

Conserved Domains (1) summary

cd01658
Location:67 → 120

Ribosomal_L30; Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that ...