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    zgc:112185 zgc:112185 [ Danio rerio (zebrafish) ]

    Gene ID: 541326, updated on 2-Nov-2024

    Summary

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    Official Symbol
    zgc:112185provided by ZNC
    Official Full Name
    zgc:112185provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050320-14
    See related
    Ensembl:ENSDARG00000038556 AllianceGenome:ZFIN:ZDB-GENE-050320-14
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human C8orf33 (chromosome 8 open reading frame 33). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zgc:112185 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (37681082..37688208, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (37793185..37800311, complement)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene WD repeat domain 24 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 3 Neighboring gene H3 histone, family 3D Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    UPF0488 protein C8orf33 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013454.2 → NP_001013472.2  UPF0488 protein C8orf33 homolog

      Status: VALIDATED

      Source sequence(s)
      BX322798
      Related
      ENSDARP00000119789.1, ENSDART00000141414.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      37681082..37688208 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BJC4.1 GenPept UniProtKB/Swiss-Prot:Q5BJC4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials