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    tmem167a transmembrane protein 167A [ Danio rerio (zebrafish) ]

    Gene ID: 541340, updated on 2-Nov-2024

    Summary

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    Official Symbol
    tmem167aprovided by ZNC
    Official Full Name
    transmembrane protein 167Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050320-29
    See related
    Ensembl:ENSDARG00000035914 AllianceGenome:ZFIN:ZDB-GENE-050320-29
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    tmem167; zgc:112458
    Summary
    Predicted to be involved in intracellular transport and protein secretion. Predicted to be located in Golgi membrane. Orthologous to human TMEM167A (transmembrane protein 167A). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tmem167a in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (43110788..43117654, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (43282408..43289274, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene single stranded DNA binding protein 2b Neighboring gene ATG10 autophagy related 10 homolog (S. cerevisiae) Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 4 Neighboring gene versican b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Temporal and spatial expression of zebrafish mctp genes and evaluation of frameshift alleles of mctp2b. Espino-Saldaña AE, et al. Gene, 2020 May 15. PMID 32001375
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein kish-A
    Names
    transmembrane protein 167
    NP_001018875.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001023581.2 → NP_001018875.2  protein kish-A precursor

      Status: VALIDATED

      Source sequence(s)
      BC091541, CR545479, EH480890
      UniProtKB/Swiss-Prot
      Q5BJC2
      UniProtKB/TrEMBL
      F1R8Q0
      Related
      ENSDARP00000084398.4, ENSDART00000089965.6
      Conserved Domains (1) summary
      pfam06842
      Location:10 → 44
      DUF1242; Protein of unknown function (DUF1242)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      43110788..43117654 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BJC2.1 GenPept UniProtKB/Swiss-Prot:Q5BJC2

    Gene LinkOut

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