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    gtse1 G-2 and S-phase expressed 1 [ Danio rerio (zebrafish) ]

    Gene ID: 553652, updated on 2-Nov-2024

    Summary

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    Official Symbol
    gtse1provided by ZNC
    Official Full Name
    G-2 and S-phase expressed 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-493
    See related
    Ensembl:ENSDARG00000013719 AllianceGenome:ZFIN:ZDB-GENE-050522-493
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb70b04; fj88g09; wu:fb70b04; wu:fj88g09; wu:fy65d12; zgc:110687
    Summary
    Predicted to enable microtubule binding activity. Predicted to be located in cytoplasm. Predicted to be active in cytoplasmic microtubule. Orthologous to human GTSE1 (G2 and S-phase expressed 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See gtse1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (19594315..19608380, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (19496364..19510432, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene synaptonemal complex protein 3 Neighboring gene actin related protein 6 Neighboring gene ATPase plasma membrane Ca2+ transporting 1b Neighboring gene zgc:171459

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Dhx15 regulates zebrafish intestinal development through the Wnt signaling pathway. Yao J, et al. Genomics, 2023 Mar. PMID 36775210
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC110687

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables microtubule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytoplasmic microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in microtubule cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    G2 and S phase-expressed protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020625.1 → NP_001018461.1  G2 and S phase-expressed protein 1

      See identical proteins and their annotated locations for NP_001018461.1

      Status: PROVISIONAL

      Source sequence(s)
      BC095371
      UniProtKB/TrEMBL
      Q503D4
      Related
      ENSDARP00000002941.6, ENSDART00000022279.8
      Conserved Domains (1) summary
      pfam15259
      Location:9 → 149
      GTSE1_N; G-2 and S-phase expressed 1

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      19594315..19608380 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005163013.5 → XP_005163070.1  G2 and S phase-expressed protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BA09, F1QTT7
      Related
      ENSDARP00000137575.1, ENSDART00000166824.3
      Conserved Domains (1) summary
      pfam15259
      Location:9 → 149
      GTSE1_N; G-2 and S-phase expressed 1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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