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    LOC9266435 trihelix transcription factor ASR3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266435, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC9266435
    Gene description
    trihelix transcription factor ASR3
    Locus tag
    OSNPB_040670900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SH3; sh4
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    Genomic context

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    See LOC9266435 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34750718..34753199, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34230855..34233527, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable arabinosyltransferase ARAD1 Neighboring gene plant UBX domain-containing protein 7 Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene probable adenylate kinase 6, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A single base change explains the independent origin of and selection for the nonshattering gene in African rice domestication. Win KT, et al. New Phytol, 2017 Mar. PMID 27861933

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    trihelix transcription factor ASR3
    Names
    Os04g0670900
    putative shattering protein
    sh 4
    shattering 4
    shattering protein
    trihelix-type transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34750718..34753199 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779851.3 → XP_015635337.1  trihelix transcription factor ASR3

      UniProtKB/TrEMBL
      A0A0P0WG66, A2XYT7, D9YVB8, Q1PIH9, Q258Z1, Q7XR48
      Conserved Domains (1) summary
      pfam13837
      Location:66 → 151
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
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    Research Materials