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SRX333035: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Agona str. NY_BAC0800001777 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 582,162 spots, 283.7M bases, 162.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: Pathogen bacterial, environmental sample from Salmonella enterica
SAMN01902306 • SRS468449 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Agona
Library:
Name: Salmonella enterica str. CFSAN003041_01 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumia Nextera XT library created for Salmonella enterica subsp. enterica serovar Agona str. NY_BAC0800001777.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA3.2.1
Runs: 1 run, 582,162 spots, 283.7M bases, 162.1Mb
Run# of Spots# of BasesSizePublished
SRR949597582,162283.7M162.1Mb2013-08-08

ID:
468053

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