Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX534151: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Meleagridis (Kentucky) str. NY-FSL-R8-0346 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 906,496 spots, 397M bases, 208.4Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center

PRJNA183850 • SRP028607 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: PAN0

SAMN02664869 • SRS602877 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Meleagridis

Library:

Name: Salmonella enterica str. NY-FSL-R8-0346 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Meleagridis (Kentucky) str. NY-FSL-R8-0346.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.42

Runs: 1 run, 906,496 spots, 397M bases, 208.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR1272507	906,496	397M	208.4Mb	2014-05-06

ID:: 737792

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